Research Output 1961 2018

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Review article
2018

Intracellular Fluid Mechanics: Coupling Cytoplasmic Flow with Active Cytoskeletal Gel

Mogilner, A. & Manhart, A. Jan 5 2018 In : Annual Review of Fluid Mechanics. 50, p. 347-370 24 p.

Research output: Contribution to journalReview article

fluid mechanics
gels
cytology
continuum mechanics
organelles

Malaria parasite evolution in a test tube

Carlton, J. M. Jan 12 2018 In : Science. 359, 6372, p. 159-160 2 p.

Research output: Contribution to journalReview article

Biological Evolution
host-parasite interaction
Host-Parasite Interactions
disease transmission
Plasmodium

Single-cell RNA sequencing to explore immune cell heterogeneity

Papalexi, E. & Satija, R. Jan 1 2018 In : Nature Reviews Immunology. 18, 1, p. 35-45 11 p.

Research output: Contribution to journalReview article

RNA Sequence Analysis
Immune System
Cell Lineage
Systems Analysis
Epigenomics
2017

Are all repeats created equal? Understanding DNA repeats at an individual level

Yang, J. & Li, F. Feb 1 2017 In : Current Genetics. 63, 1, p. 57-63 7 p.

Research output: Contribution to journalReview article

Centromere
Epigenomics
Chromatin
DNA
Genome

Biophysically motivated regulatory network inference: Progress and prospects

Äijö, T. & Bonneau, R. Jan 1 2017 In : Human Heredity. 81, 2, p. 62-77 16 p.

Research output: Contribution to journalReview article

Technology
Chromatin
Research Design
Learning
Genome

Generation and Evolution of Neural Cell Types and Circuits: Insights from the Drosophila Visual System

Perry, M., Konstantinides, N., Pinto-Teixeira, F. & Desplan, C. Nov 27 2017 In : Annual Review of Genetics. 51, p. 501-577 77 p.

Research output: Contribution to journalReview article

Drosophila
Neurons
Diptera
Brain
Insects

Getting the flu: 5 key facts about influenza virus evolution

Johnson, K. E. E., Song, T., Greenbaum, B. & Ghedin, E. Aug 1 2017 In : PLoS Pathogens. 13, 8, e1006450

Research output: Contribution to journalReview article

Orthomyxoviridae

Quantifying protein (dis)order: A study of bacteria, yeast, and mammalian cells maps the melting behavior of cellular proteins

Vogel, C. Feb 24 2017 In : Science. 355, 6327, p. 794-795 2 p.

Research output: Contribution to journalReview article

cells and cell components
Freezing
yeast
melting
Yeasts

Repair-Resistant DNA Lesions

Geacintov, N. E. & Broyde, S. Aug 21 2017 In : Chemical Research in Toxicology. 30, 8, p. 1517-1548 32 p.

Research output: Contribution to journalReview article

DNA Repair
Repair
DNA
Nucleotides
Drug Design

Retinal perception and ecological significance of color vision in insects

Lebhardt, F. & Desplan, C. Dec 1 2017 In : Current Opinion in Insect Science. 24, p. 75-83 9 p.

Research output: Contribution to journalReview article

color vision
wavelengths
eyes
insect
opsin

The lung mycobiome in the next-generation sequencing era

Tipton, L., Ghedin, E. & Morris, A. Apr 3 2017 In : Virulence. 8, 3, p. 334-341 8 p.

Research output: Contribution to journalReview article

Lung
Fungi
Respiratory Tract Diseases
Names
Mycobiome

The role of 'omics' in the quest to eliminate human filariasis

Lustigman, S., Grote, A. & Ghedin, E. Apr 20 2017 In : PLoS Neglected Tropical Diseases. 11, 4, e0005464

Research output: Contribution to journalReview article

Timing temporal transitions during brain development

Rossi, A. M., Fernandes, V. M. & Desplan, C. Feb 1 2017 In : Current Opinion in Neurobiology. 42, p. 84-92 9 p.

Research output: Contribution to journalReview article

Brain
Aptitude
Neural Stem Cells
Invertebrates
Nervous System
2016

A Case for Distributed Control of Local Stem Cell Behavior in Plants

Rahni, R., Efroni, I. & Birnbaum, K. D. Sep 26 2016 In : Developmental Cell. 38, 6, p. 635-642 8 p.

Research output: Contribution to journalReview article

Stem Cells
Meristem
Mechanics

Agent-based modeling: Case study in cleavage furrow models

Mogilner, A. & Manhart, A. Nov 7 2016 In : Molecular Biology of the Cell. 27, 22, p. 3379-3384 6 p.

Research output: Contribution to journalReview article

Systems Analysis
Cell Biology
History
Recognition (Psychology)

A synopsis on aging—Theories, mechanisms and future prospects

da Costa, J. P., Vitorino, R., Silva, G. M., Vogel, C., Duarte, A. C. & Rocha-Santos, T. Aug 1 2016 In : Ageing Research Reviews. 29, p. 90-112 23 p.

Research output: Contribution to journalReview article

Free Radical Scavengers
Stem Cell Transplantation
Biochemistry
Reactive Oxygen Species
Biochemical Phenomena

How many ways are there to make a root?

Birnbaum, K. D. Dec 1 2016 In : Current Opinion in Plant Biology. 34, p. 61-67 7 p.

Research output: Contribution to journalReview article

blood vessels
cytokinins
ontogeny
auxins
embryogenesis

Network inference from multimodal data: A review of approaches from infectious disease transmission

Ray, B., Ghedin, E. & Chunara, R. Dec 1 2016 In : Journal of Biomedical Informatics. 64, p. 44-54 11 p.

Research output: Contribution to journalReview article

Infectious Disease Transmission
Electric power transmission networks
Metagenomics
Epidemiology
Biomarkers

Nitrate Transport, Sensing, and Responses in Plants

O'Brien, J. A. A., Vega, A., Bouguyon, E., Krouk, G., Gojon, A., Coruzzi, G. & Gutiérrez, R. A. A. 2016 In : Molecular Plant. 9, 6, p. 837-856 20 p.

Research output: Contribution to journalReview article

Nitrates
plant response
nitrates
Growth and Development
Food

Programmed cell death acts at different stages of Drosophila neurodevelopment to shape the central nervous system

Pinto-Teixeira, F., Konstantinides, N. & Desplan, C. Aug 1 2016 In : FEBS Letters. p. 2435-2453 19 p.

Research output: Contribution to journalReview article

Neurology
Cell death
Drosophila
Cell Death
Central Nervous System

Transcriptional Control of Developmental Cell Behaviors

Bernadskaya, Y. & Christiaen, L. Oct 6 2016 In : Annual Review of Cell and Developmental Biology. 32, p. 77-101 25 p.

Research output: Contribution to journalReview article

Gene Regulatory Networks
Cues
Cell-Matrix Junctions
Developmental Genes
Cell Shape
2015

Mechanisms of X chromosome dosage compensation

Ercan, S. Jan 1 2015 In : Journal of Genomics. 3, p. 1-19 19 p.

Research output: Contribution to journalReview article

X Chromosome
2013

Are mantle plumes periodic?

Rampino, M. R. & Prokoph, A. Mar 19 2013 In : Eos. 94, 12, p. 113-114 2 p.

Research output: Contribution to journalReview article

mantle plume
2010

Keeping in touch with contact inhibition of locomotion

Mayor, R. & Carmona-Fontaine, C. Jun 2010 In : Trends in Cell Biology. 20, 6, p. 319-328 10 p.

Research output: Contribution to journalReview article

Contact Inhibition
Locomotion
rho GTP-Binding Proteins
Monomeric GTP-Binding Proteins
Cell Movement
2005

Genetic network during neural crest induction: From cell specification to cell survival

Steventon, B., Carmona-Fontaine, C. & Mayor, R. Dec 2005 In : Seminars in Cell and Developmental Biology. 16, 6, p. 647-654 8 p.

Research output: Contribution to journalReview article

Neural Crest
Cell Survival
Transcription Factors
Maintenance

Pseudomonas aeruginosa Genome Database and PseudoCAP: Facilitating community-based, continually updated, genome annotation

Winsor, G. L., Lo, R., Ho Sui, S. J., Ung, K. S. E., Huang, S., Cheng, D., Ching, W. K. H., Hancock, R. E. W. & Brinkman, F. S. L. Jan 1 2005 In : Nucleic acids research. 33, DATABASE ISS.

Research output: Contribution to journalReview article

User-Computer Interface
Systems Integration
Genetic Databases
Bacterial Genomes
Bacterial DNA