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  • 2023

    Convex Non-convex Variational Models

    Lanza, A., Morigi, S., Selesnick, I. W. & Sgallari, F., Jan 1 2023, Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging: Mathematical Imaging and Vision. Springer International Publishing, p. 3-59 57 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2022

    Comprehensive Glaucoma Imaging

    Glidai, Y., Kahook, M. Y., Noecker, R. J., Wollstein, G. & Schuman, J. S., Jan 1 2022, Albert and Jakobiec's Principles and Practice of Ophthalmology: Fourth Edition. Springer International Publishing, p. 2099-2119 21 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Cycloablation

    Liebenthal, R., Kahook, M. Y., Noecker, R. J. & Schuman, J. S., Jan 1 2022, Albert and Jakobiec's Principles and Practice of Ophthalmology: Fourth Edition. Springer International Publishing, p. 2463-2479 17 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Introductory magnetic resonance imaging physics

    Guenette, J. P., Sodickson, D. K. & Sodickson, A. D., Jan 1 2022, Handbook of Neuro-Oncology Neuroimaging. Elsevier, p. 173-183 11 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Putting mobile DNA to work: The toolbox

    Boeke, J. D., Jun 1 2022, Mobile DNA II. Wiley-Blackwell, p. 24-37 14 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Retrotransposition Mechanisms and Host Factors

    Ooi, S. L., Burns, K. H. & Boeke, J. D., Jan 1 2022, Retrotransposons and Human Disease: L1 Retrotransposons as a Source of Genetic Diversity. World Scientific Publishing Co., p. 163-198 36 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Ty1 and ty5 of saccharomyces cerevisiae

    Voytas, D. F. & Boeke, J. D., Jun 1 2022, Mobile DNA II. Wiley-Blackwell, p. 631-662 32 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2021

    Micro-tweezers and Force Microscopy Techniques for Single-Cell Mechanobiological Analysis

    Gong, L., Qian, W., Morales, R. T. T., Tong, J., Bajpai, A. & Chen, W., Jan 1 2021, Handbook of Single-Cell Technologies. Springer Singapore, p. 1011-1032 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Nonlinear smoothing of core body temperature data with random gaps and outliers (DRAGO)

    Parekh, A., Selesnick, I. W., Baroni, A., Bubu, O. M., Varga, A. W., Rapoport, D. M., Ayappa, I., Blessing, E. M. & Osorio, R. S., Apr 12 2021, Biomedical Signal Processing: Innovation and Applications. Springer International Publishing, p. 63-84 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2020

    A Framework to Construct a Longitudinal DW-MRI Infant Atlas Based on Mixed Effects Modeling of dODF Coefficients

    Kim, H., Styner, M., Piven, J. & Gerig, G., 2020, Mathematics and Visualization. Springer Science and Business Media Deutschland GmbH, Vol. 2020. p. 149-159 11 p. (Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Open Access
  • Cells involved in mechanotransduction including mesenchymal stem cells

    Cabahug-Zuckerman, P., Liu, C. & Castillo, A. B., Jun 26 2020, Encyclopedia of Bone Biology. Elsevier, p. 311-332 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Cellular and molecular mechanotransduction in bone

    Castillo, A. B., Chen, J. C. & Jacobs, C. R., Jan 1 2020, Marcus and Feldman’s Osteoporosis. Elsevier, p. 309-335 27 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Controversies in prostate cancer diagnosis and management

    Press, B. H., Taneja, S. S. & Bjurlin, M. A., Oct 15 2020, Design and Implementation of the Modern Men's Health Center: A Multidisciplinary Approach. Springer, p. 163-184 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • OCT technique: Past, present and future

    Kostanyan, T., de los Angeles Ramos-Cadena, M., Wollstein, G. & Schuman, J. S., Jan 1 2020, OCT and Imaging in Central Nervous System Diseases: The Eye as a Window to the Brain: Second Edition. Springer International Publishing, p. 7-31 25 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Transient Artifacts Suppression in Time Series via Convex Analysis

    Feng, Y., Ding, B., Graber, H. & Selesnick, I., Jan 1 2020, Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications. Springer International Publishing, p. 107-138 32 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2019

    Eye-hand re-coordination: A pilot investigation of gaze and reach biofeedback in chronic stroke

    Rizzo, J. R., Beheshti, M., Shafieesabet, A., Fung, J., Hosseini, M., Rucker, J. C., Snyder, L. H. & Hudson, T. E., 2019, Mathematical Modelling in Motor Neuroscience: State of the Art and Translation to the Clinic. Gaze Orienting Mechanisms and Disease. Ramat, S. & Shaikh, A. G. (eds.). Elsevier B.V., p. 361-374 14 p. (Progress in Brain Research; vol. 249).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Eye position-dependent opsoclonus in mild traumatic brain injury

    Rizzo, J. R., Hudson, T. E., Sequeira, A. J., Dai, W., Chaudhry, Y., Martone, J., Zee, D. S., Optican, L. M., Balcer, L. J., Galetta, S. L. & Rucker, J. C., 2019, Mathematical Modelling in Motor Neuroscience: State of the Art and Translation to the Clinic. Gaze Orienting Mechanisms and Disease. Ramat, S. & Shaikh, A. G. (eds.). Elsevier B.V., Vol. 249. p. 65-78 14 p. (Progress in brain research).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Methods for hyaluronan molecular mass determination by agarose gel electrophoresis

    Cowman, M. K., 2019, Methods in Molecular Biology. Humana Press Inc., p. 91-102 12 p. (Methods in Molecular Biology; vol. 1952).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Microfluidics for immuno-oncology

    Ma, C., Harris, J., Morales, R. T. T. & Chen, W., Dec 31 2019, Nanotechnology for Microfluidics. Wiley, p. 149-176 28 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Modeling gaze position-dependent opsoclonus

    Optican, L. M., Rucker, J. C., Rizzo, J. R. & Hudson, T. E., 2019, Mathematical Modelling in Motor Neuroscience: State of the Art and Translation to the Clinic. Gaze Orienting Mechanisms and Disease. Ramat, S. & Shaikh, A. G. (eds.). Elsevier B.V., p. 35-61 27 p. (Progress in Brain Research; vol. 249).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Translational Neurology of Slow Saccades

    Rucker, J. C., Hudson, T. & Rizzo, J. R., 2019, Contemporary Clinical Neuroscience. Springer Nature, p. 221-254 34 p. (Contemporary Clinical Neuroscience).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2018

    Coupling yeast golden gate and VEGAS for efficient assembly of the violacein pathway in saccharomyces cerevisiae

    Chuang, J., Boeke, J. D. & Mitchell, L. A., 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1671. p. 211-225 15 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Dynamic vascular optical tomographic imaging for peripheral artery disease and breast cancer

    Hielscher, A. H., Marone, A., Altoé, M. L., Bajakian, D. R., Kalinsky, K., Hershman, D. L. & Kim, H. K., Jan 1 2018, Neurophotonics and Biomedical Spectroscopy. Elsevier, p. 353-400 48 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Evaluation and treatment for older men with elevated PSA

    Press, B. H., Bjurlin, M. A. & Taneja, S. S., May 10 2018, Prostate Cancer: Clinical Case Scenarios. Springer International Publishing, p. 21-41 21 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Open Access
  • Retrotransposons

    Boeke, J. D., Jan 1 2018, RNA Genetics: Volume II: Retroviruses, Viroids, and RNA Recombination. CRC Press, p. 59-103 45 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Visuospatial Impairment

    Rizzo, J. R., Beheshti, M. & Kapoor, N., Jan 1 2018, Stroke Rehabilitation. Elsevier, p. 169-184 16 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2017

    From physiological signals to pulsatile dynamics: A Sparse system identification approach

    Faghih, R. T., Dec 27 2017, Dynamic Neuroscience: Statistics, Modeling, and Control. Springer International Publishing, p. 239-265 27 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2016

    Characterization of L1-ribonucleoprotein particles

    Taylor, M. S., La Cava, J., Dai, L., Mita, P., Burns, K. H., Rout, M. P. & Boeke, J. D., 2016, Methods in Molecular Biology. Humana Press Inc., p. 311-338 28 p. (Methods in Molecular Biology; vol. 1400).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Focal Therapy for Prostate Cancer

    Mendhiratta, N. & Taneja, S. S., 2016, Prostate Cancer: Science and Clinical Practice: Second Edition. Elsevier Inc., p. 563-577 15 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Open Access
  • Forward models of light transport in biological tissue

    Hielscher, A. H., Kim, H. K. & Klose, A. D., Apr 19 2016, Handbook of Biomedical Optics. CRC Press, p. 319-336 18 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Introductory Magnetic Resonance Imaging Physics

    Sodickson, A. D. & Sodickson, D. K., Apr 12 2016, Handbook of Neuro-Oncology Neuroimaging: Second Edition. Elsevier Inc., p. 157-166 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Low-rank plus sparse spatiotemporal MRI: Acceleration, background suppression, and motion learning

    Otazo, R., Candes, E. & Sodickson, D. K., Jul 6 2016, Handbook of Robust Low-Rank and Sparse Matrix Decomposition: Applications in Image and Video Processing. CRC Press, p. 17.1-17.18

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Multiparametric mri of the prostate as a tool for prostate cancer detection, localization, and risk assessment

    Bjurlin, M. A., Mendhiratta, N. & Taneja, S. S., Jan 1 2016, The Prostate Cancer Dilemma: Selecting Patients for Active Surveillance, Focal Ablation and Definitive Therapy. Springer International Publishing, p. 107-126 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • OCT technique - Past, present and future

    Kostanyan, T., Wollstein, G. & Schuman, J. S., Jan 1 2016, OCT in Central Nervous System Diseases: The Eye as a Window to the Brain. Springer International Publishing, p. 7-34 28 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Optic nerve: Optical coherence tomography

    Wang, B., Wollstein, G. & Schuman, J. S., Jan 1 2016, Pearls of Glaucoma Management: Second Edition. Springer Berlin Heidelberg, p. 51-61 11 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2015

    Complications of Cyclodestructive Procedures

    Kahook, M. Y. & Schuman, J. S., 2015, Surgical Management. Elsevier Inc., Vol. 2. p. 1167-1171 5 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • OCT imaging in glaucoma

    Nevins, J. E., Wollstein, G. & Schuman, J. S., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1737-1770 34 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2014

    Inverse Models for Diffuse Optical Molecular Tomography

    Kim, H. K. & Hielscher, A. H., Jul 25 2014, Optical Molecular Imaging. Elsevier, Vol. 4. p. 257-268 12 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Organic Anion Transporters

    Bush, K. T., Nagle, M., Truong, D. M., Bhatnagar, V., Kaler, G., Eraly, S. A., Wu, W. & Nigam, S. K., Sep 2 2014, Drug Transporters: Molecular Characterization and Role in Drug Disposition: Second Edition. Wiley-Blackwell, Vol. 9781118489932. p. 25-41 17 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2013

    Cellular and Molecular Mechanotransduction in Bone

    Chen, J. C., Castillo, A. B. & Jacobs, C. R., Jun 2013, Osteoporosis: Fourth Edition. Elsevier Inc., p. 453-475 23 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Fungal, Plant and Animal Retrotransposon Elements

    Boeke, J. D., 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 1. p. 248-253 6 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Management of high-grade prostatic intraepithelial neoplasia (HGPIN)

    Ramaswamy, K., Lepor, H. & Taneja, S. S., Jan 1 2013, Prostate Cancer Diagnosis: PSA, Biopsy and Beyond. Humana Press Inc., p. 241-254 14 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Using functional proteome microarrays to study protein lysine acetylation

    Lu, J. Y., Lin, Y. Y., Boeke, J. D. & Zhu, H., 2013, Protein Acetylation: Methods and Protocols. Humana Press Inc., p. 151-165 15 p. (Methods in Molecular Biology; vol. 981).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • 2012

    Assembling DNA fragments by USER fusion

    Annaluru, N., Muller, H., Ramalingam, S., Kandavelou, K., London, V., Richardson, S. M., Dymond, J. S., Cooper, E. M., Bader, J. S., Boeke, J. D. & Chandrasegaran, S., 2012, Gene Synthesis: Methods and Protocols. Peccoud, J. (ed.). p. 77-95 19 p. (Methods in Molecular Biology; vol. 852).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Assembling large DNA segments in yeast

    Muller, H., Annaluru, N., Schwerzmann, J. W., Richardson, S. M., Dymond, J. S., Cooper, E. M., Bader, J. S., Boeke, J. D. & Chandrasegaran, S., 2012, Gene Synthesis: Methods and Protocols. Peccoud, J. (ed.). p. 133-150 18 p. (Methods in Molecular Biology; vol. 852).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Design-a-gene with genedesign

    Richardson, S. M., Liu, S., Boeke, J. D. & Bader, J. S., 2012, Gene Synthesis: Methods and Protocols. Peccoud, J. (ed.). p. 235-247 13 p. (Methods in Molecular Biology; vol. 852).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Ghrelin O-Acyltransferase Assays and Inhibition

    Taylor, M. S., Hwang, Y., Hsiao, P. Y., Boeke, J. D. & Cole, P. A., Jan 2012, Methods in Enzymology. Academic Press Inc., p. 205-228 24 p. (Methods in Enzymology; vol. 514).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Open Access
  • Optical coherence tomography in glaucoma

    Ungar, A. K., Wollstein, G. & Schuman, J. S., 2012, Diagnostic Technologies in Ophthalmology. Bentham Science Publishers Ltd., p. 113-143 31 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Open Access
  • Strain construction and screening methods for a yeast histone H3/H4 mutant library

    Dai, J. & Boeke, J. D., 2012, Chromatin Remodeling: Methods and Protocols. Morse, R. H. (ed.). p. 1-14 14 p. (Methods in Molecular Biology; vol. 833).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • The build-a-genome course

    Cooper, E. M., Müller, H., Chandrasegaran, S., Bader, J. S. & Boeke, J. D., 2012, Gene Synthesis: Methods and Protocols. Peccoud, J. (ed.). p. 273-283 11 p. (Methods in Molecular Biology; vol. 852).

    Research output: Chapter in Book/Report/Conference proceedingChapter