Research Output

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Conference contribution
2019

Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots

Petingi, L. & Schlick, T., 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer Verlag, p. 68-79 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Nondestructive and Fast MRI-based Technique Battery Diagnostic

Jerschow, A., 2018, 35th Annual International Battery Seminar and Exhibit 2018. Cambridge EnerTech, Cambridge Innovation Institute, p. 136-158 23 p. (35th Annual International Battery Seminar and Exhibit 2018; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Coherent wavepacket evolution analysis reveals a conical intersection in a highly fluorescent molecule

Brazard, J., Bizimana, L. A., Carbery, W. P., Gellen, T. & Turner, D. B., Jul 18 2016, International Conference on Ultrafast Phenomena, UP 2016. OSA - The Optical Society, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Upgrade of the HET segment control system, utilizing state-of-The-Art, decentralized and embedded system controllers

Haeuser, M., Richter, J., Kriel, H., Turbyfill, A., Buetow, B. & Ward, M., 2016, Ground-Based and Airborne Telescopes VI. Marshall, H. K., Hall, H. J. & Gilmozzi, R. (eds.). SPIE, 990602. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9906).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Imaging with photoelastic modulators

Nichols, S., Freudenthal, J., Arteaga, O. & Kahr, B., 2014, Polarization: Measurement, Analysis, and Remote Sensing XI. SPIE, 909912. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9099).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polarimetric analysis of the extraordinary optical transmission through subwavelength hole arrays

Nichols, S., Arteaga, O., Maoz, B., Markovich, G. & Kahr, B., 2014, Plasmonics: Metallic Nanostructures and Their Optical Properties XII. Boardman, A. D. (ed.). SPIE, 91631W. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9163).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

Asynchronous signal passing for tile self-assembly: Fuel efficient computation and efficient assembly of shapes

Padilla, J. E., Patitz, M. J., Pena, R., Schweller, R. T., Seeman, N. C., Sheline, R., Summers, S. M. & Zhong, X., 2013, Unconventional Computation and Natural Computation - 12th International Conference, UCNC 2013, Proceedings. p. 174-185 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7956 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic and vibrational coherences in algal light-harvesting proteins

Turner, D. B. & Scholes, G. D., 2013, 18th International Conference on Ultrafast Phenomena, UP 2012. 08004. (EPJ Web of Conferences; vol. 41).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2011

Comparison of electronic and vibrational coherence measured by two-dimensional electronic spectroscopy

Turner, D. B. & Scholes, G. D., Dec 1 2011, Laser Science, LS 2011. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Finite state automata by DNA self-assembly

Jonoska, N. & Seeman, N. C., 2011, ICT Innovations 2010 - Second International Conference, ICT Innovations 2010, Revised Selected Papers. p. 1-4 4 p. (Communications in Computer and Information Science; vol. 83 CCIS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Manipulating crystal growth and polymorphism by confinement in nanoscale crystallization chambers

Hamilton, B., McFerrin, A., Ha, J. M., Hillmyer, M. A. & Ward, M. D., 2011, Materials Engineering and Sciences Division - Core Programming Topic at the 2011 AIChE Annual Meeting. AIChE, p. 891-892 2 p. (Materials Engineering and Sciences Division - Core Programming Topic at the 2011 AIChE Annual Meeting; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2010

Coherent measurements of high-order electronic correlations in GaAs quantum wells

Turner, D. B. & Nelson, K. A., 2010, International Conference on Ultrafast Phenomena, UP 2010. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA: Not merely the secret of life

Seeman, N. C., 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. ASME, p. 349-350 2 p. (Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Impact of carcinogen-DNA adducts on DNA methylation

Gromova, E. S., Subach, O. M., Baskunov, V. B. & Geacintov, N. E., Jun 1 2010, Structural Biology of DNA Damage and Repair. American Chemical Society, p. 103-116 14 p. (ACS Symposium Series; vol. 1041).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multiple-quantum 2D spectroscopy of many-body correlations in GaAs quantum wells

Turner, D. B., Stone, K. W., Wen, P., Arias, D. H. & Nelson, K. A., 2010, Ultrafast Phenomena in Semiconductors and Nanostructure Materials XIV. 76001J. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 7600).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Probing biexcitons in quantum dots using femtosecond pump/probe and two dimensional electronic spectroscopy

Tyagi, P., Stone, K., Turner, D., Sewall, S., Nelson, K. & Kambhampati, P., Dec 1 2010, International Conference on Ultrafast Phenomena, UP 2010. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proton transfer in perfluorosulfonic acid functionalized carbon nanotubes

Habenicht, B. F., Paddison, S. J. & Tuckerman, M. E., 2010, Polymer Materials and Membranes for Energy Devices. Materials Research Society, p. 7-12 6 p. (Materials Research Society Symposium Proceedings; vol. 1269).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Selective excitation of resonances in 2D fourier transform optical spectroscopy with tailored pulse shapes

Wen, P., Arias, D. H., Turner, D. B. & Nelson, K. A., Dec 1 2010, International Conference on Ultrafast Phenomena, UP 2010. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

Aggregation-disaggregation transition of DNA coated colloids: Experiments and theory

Dreyfus, R., Leunissen, M. E., Sha, R., Tkachenko, A. V., Seeman, N. C., Pine, D. J. & Chaikin, P. M., 2009, Extended Abstracts for 6th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2009. p. 196-200 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chiroptical imaging of crystals by mueller matrix microscopy

Freundenthal, J., Gunn, E. & Kahr, B., 2009, Laser Science, LS 2009. Optical Society of America, (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards self-replicating materials of DNA functionalized colloidal particles

Leunissen, M. E., Dreyfus, R., Sha, R., Wang, T., Seeman, N. C., Pine, D. J. & Chaikin, P. M., 2009, Extended Abstracts for 6th Annual Conference on Foundations of Nanoscience: Self-Assembled Architectures and Devices, FNANO 2009. p. 172-176 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2008

All optical platform for parallel and spatiotemporal control of neuronal activity

Wang, S., Wang, Y., Szobota, S., Volgraf, M., Liu, Z., Sun, C., Trauner, D., Isacoff, E. Y. & Zhang, X., 2008, Frontiers in Optics, FiO 2008. Optical Society of America (OSA), (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mechanistic investigations of crystallization: From self-assembled nanomaterials to pathological biomineralization

Rimer, J. D., Ward, M. D., Lobo, R. F. & Vlachos, D., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pathological biomineralization of calcium oxalate kidney stones

Rimer, J. D., Wesson, J. A. & Ward, M. D., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proton - SO3 -Interactions in nafion polymer electrolyte membrane fuel cells gleaned from Ab initio molecular dynamics simulations of Mono-, Di-, and Tetra-Hydrate trifluoromethanesulfonic acids

Hayes, R. L. & Tuckerman, M. E., 2008, 2008 AIChE Spring National Meeting, Conference Proceedings. (2008 AIChE Spring National Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proton - SO3- interactions in Nafion polymer electrolyte membrane fuel cells gleaned from ab initio molecular dynamics simulations of mono-, di-, and tetra-hydrate trifluoromethanesulfonic acids

Hayes, R. L. & Tuckerman, M. E., 2008, American Chemical Society - 235th National Meeting, Abstracts of Scientific Papers. (ACS National Meeting Book of Abstracts).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tunable polymer networks based on specific hydrogen bonding motifs

Nair, K. P., Weck, M. & Breedveld, V., 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

Solid-state NMR studies of ultramarine pigments discloration

Del Federico, E., Newman, J., Tyne, L., O'Hern, C., Isolani, L. & Jerschow, A., 2007, Magnetic Resonance in Material Science. p. 45-50 6 p. (Materials Research Society Symposium Proceedings; vol. 984).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

Self-correcting self-assembly: Growth models and the hammersley process

Baryshnikov, Y., Coffman, E., Seeman, N. & Yimwadsana, T., 2006, DNA Computing - 11th International Workshop on DNA Computing, DNA11, Revised Selected Papers. p. 1-11 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3892 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2005

DNA assembly of component arrays for nanoscale electronics

Kiehl, R. A., Le, J. D., Musier-Forsyth, K., Pinto, Y. Y., Seeman, N. C. & Andrew Taton, T., 2005, 2005 5th IEEE Conference on Nanotechnology. p. 5-8 4 p. 1500636. (2005 5th IEEE Conference on Nanotechnology; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Motifs and methods in structural DNA nanotechnology

Sha, R., Zhang, X., Liao, S., Constantinou, P. E., Ding, B., Wang, T., Seeman, N. & al., 2005, Proceedings of the International Conference on Nanomaterials, NANO 2005, Mepco Schlenk Engineering College, Srivakasi, India, July 13-15, 2005. Rajendran, V. (ed.). p. 3-10

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2003

Design of photonic crystals fabricated from DNA lattices

Sauer, P., Cui, H. L. & Seeman, N. C., 2003, 2003 International Semiconductor Device Research Symposium, ISDRS 2003 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 44-45 2 p. 1271987. (2003 International Semiconductor Device Research Symposium, ISDRS 2003 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Design tools for the fabrication of a photonic crystal based on DNA junctions

Sauer, P., Cui, H. L. & Seeman, N. C., 2003, 2003 3rd IEEE Conference on Nanotechnology, IEEE-NANO 2003 - Proceedings. IEEE Computer Society, p. 428-431 4 p. 1231810. (Proceedings of the IEEE Conference on Nanotechnology; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2002

Methods for macromolecular modeling (M3): Assessment of progress and future perspectives

Gan, H. H. & Schlick, T., 2002, Computational Methods for Macromolecules: Challenges and Applications: Proceedings of the 3rd International Workshop on Algorithms for Macromolecular Modelling, New York, October 12-14, 2000. Schlick, T. & Gan, H. H. (eds.). Berlin: Springer-Verlag, p. 1-25 (Lecture Notes in Computational Science and Engineering; vol. 24).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2001

Challenges and applications for self-assembled DNA nanostructures

Reif, J. H., LaBean, T. H. & Seeman, N. C., 2001, DNA Computing - 6th International Workshop on DNA-Based Computers, DNA 2000 Leiden, The Netherlands, June 13-17, 2000 Revised Papers. Rozenberg, G. & Condon, A. (eds.). Springer Verlag, p. 173-198 26 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2054).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Long-timestep biomolecular dynamics simulations: LN performance on a polymerase β/DNA system

Schlick, T. & Yang, L., 2001, Multiscale Computational Methods in Chemistry and Physics: Proceedings of the Eilat Workshops on Multiscale Computations in Chemistry and Biology, April 5-11, 2000. Brandt, A., Bernholc, J. & Binder, K. (eds.). Amsterdam, The Netherlands: IOS Press, p. 293-305 (NATO Science Series: Series III Computer and Systems Sciences; vol. 177).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Programmable assembly at the molecular scale: Self-assembly of DNA lattices (invited paper)

Reif, J. H., LaBean, T. H. & Seeman, N. C., 2001, Proceedings - IEEE International Conference on Robotics and Automation. Vol. 1. p. 966-971 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1998

Complete calculation of coherence pathways

Jerschow, A. & Muller, N., 1998, Magnetic resonance & related phenomena: Proceedings of the Joint 29th AMPERE-13th ISMAR International Conference, Berlin, 1998. p. 184

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Directing the structure of matter through DNA nanotechnology

Seeman, N. C., 1998, Proceedings - IEEE International Joint Symposia on Intelligence and Systems. Institute of Electrical and Electronics Engineers Inc., p. 146-150 5 p. 685432. (Proceedings - IEEE International Joint Symposia on Intelligence and Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Directing the structure of matter through nanotechnology

Seeman, N., 1998, Proceedings of the IEEE International Joint Symposia on Intelligence and Systems. Los Alamitos, CA: IEEE Computer Society, p. 146-150

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1997

Path integral molecular dynamics: A computational approach to quantum statistical mechanics

Tuckerman, M. & Hughes, AL., 1997, Proceedings of the CECAM Workshop on Computer Simulation of Rare Events. Villa Marigola, Lerici, Italy.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1996

Influence of backbone rigidity on the thermotropic behavior of side-chain liquid crystalline (SCLC) polymers synthesized by ring opening metathesis polymerization (ROMP)

Weck, M., Maughon, B. R., Mohr, B. & Grubbs, R. H., Mar 1996, American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 1 ed. Vol. 37. p. 587-588 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1994

Calibration of the timestep for molecular dynamics of supercoiled DNA modeled by B-splines

Schlick, T., Li, B. & Hao, M-H., 1994, Structural Biology: State of the Art 1993, Proceedings of the Eighth Conversation. Sarma, M. H. & Sarma, R. S. (eds.). Guilderland, New York: Adenine Press, Vol. 1. p. 157-174

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Control of DNA structure and topology: an overview

Seeman, N., Zhang, Y., Du, S. M., Wang, H., Mueller, J. E., Wang, Y., Liu, B., Qi, J. & Chen, J., 1994, Materials Research Society Symposium - Proceedings. Materials Research Society, Vol. 351. p. 57-66 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1993

Nanoengineering with DNA

Seeman, N. C., 1993, Biomolecular Materials. Publ by Materials Research Society, p. 123-134 12 p. (Materials Research Society Symposium Proceedings; vol. 292).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1992

Photoinduced electron transfer and fluorescence mechanisms in covalently linked polynuclear aromatic-nucleotide complexes

Geacintov, N. E., Mao, B., France, L. L., Zhao, R., Chen, J., Liu, T. M., Ya, N. Q., Margulis, L. A. & Sutherland, J. C., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 774-783 10 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1989

Exact quantum results for reactive scattering using hyperspherical (APH) coordinates

Parker, G. A., Pack, R. T., Laganà, A., Archer, J. D., Kress, J. D. & Bacic, Z., 1989, Proceedings of the NATO Advanced Research Workshop on Supercomputer Algorithms for Reactivity, Dynamics, and Kinetics of Small Molecules. Lagana, A. (ed.). Kluwer, Dordrecht, p. 105-129 (NATO ASI Series C ; vol. 277).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1987

Low energy process technology for extraction of PCB's from contaminated sediments and sludges

Steiner, W., Rugg, B. & Brenner, W., 1987, Proceedings of the International Congress on Hazardous Waste Management, Chattanooga, TN, June 8-12, 1987.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1986

HIGH SOLIDS CONTINUOUS HYDROLYSIS OF CELLULOSE.

Armstrong, P. N. G., Rugg, B. A. & Steiner, W. A., 1986, Proceedings of the 14th Australasian Chemical Engineering Conference, Adelaide, Australia, August 19-22, 1986. Inst of Chemical Engineers, p. 458-462 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mean-field approach to vibrational energy levels and tunneling dynamics in polyatomic systems

Gerber, R. R., Ratner, M. A. & Bacic, Z., 1986, Tunneling: Proceedings of the 19th Jerusalem Symposium on Quantum Chemistry. Jortner, J. & Pullman, B. (eds.). Reidel, Drodrecht, p. 25-38

Research output: Chapter in Book/Report/Conference proceedingConference contribution