Research Output 1960 2017

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Chapter (peer-reviewed)
2015

Supramolecular polymers engineered via olefin metathesis

Elacqua, E., Ten Brummelhuis, N. & Weck, M. 2015 Handbook of metathesis. Grubbs (ed.). p. 71-92

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Olefins
Polymers
2014

Computational techniques for density functional based molecular dynamics calculations in plane-wave and localized basis sets

Tzanov, A. T. & Tuckerman, M. 2014 Many-electron approaches in physics, chemistry and mathematics. Berlin: Springer, p. 261-283

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Molecular dynamics

Oxidation adjacent to C=X bonds by dehydration

Shannon, S. & Diao, T. 2014 Comprehensive organic synthesis II. Knochel, P. & Molander, G. A. (eds.). Elsevier Comp. Org. Synth., Vol. 7, p. 178-212

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Dehydration
Oxidation
2013

Graph applications to RNA structure and function

Kim, N., Fuhr, K. N. & Schlick, T. 2013 Biophysics of RNA folding. Russell, R. (ed.). Springer-Verlag, p. 23-51 Chapter 3. (Biophysics for the Life Sciences 3)

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

RNA
2012

Designing a sustainable and stretchable "fox testicle" ice cream

Johnson, A., Kirshenbaum, K. & McBride, A. E. 2012 The kitchen as laboratory. Vega, C., Ubbink, J. & van der Linden, E. (eds.). New York: Columbia University Press

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Ice

DNA crystals, constructs and devices

Seeman, N., Birktoft, J. J., Sha, R., Gu, H., Wang, T., Zheng, J., Chao, J., Constantinou, P. E., Ding, B. & Mao, C. 2012 Handbook of neuroscience, engineering and technology. Goddard III, W. A., Brenner, D. W., Lyshevski, S. E. & Iafrate, G. J. (eds.). 3rd ed. New York: CRC Press, p. 1037-1049

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

DNA
Crystals

Histories of crystallography by Shafranovskii and Schuh

Kahr, B. & Shtukenberg, A. G. 2012 Recent advances in crystallography. Benedict, J. B. (ed.). p. 1-34

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Crystallography
2009

Ab initio quantum mechanical/molecular mechanical studies of histone modifying enzymes

Zhang, Y. 2009 Multi-scale quantum models for biocatalysis: Modern techniques and applications. York, D. M. & Lee, T-S. (eds.). New York: Springer Verlag, p. 341-350

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Enzymes

Colourful world of dyeing crystals

Brustolon, M. & Kahr, B. 2009 The treasures of eureka. Electron paramagnetic resonance spectroscopy: From fundamental research to pioneering applications. Salikhov, K. M. (ed.). New Zealand: Axas Publishing

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Dyeing
Crystals

Investigation of deactivation of co-salen catalysts in the hydrolytic kinetic resolution of epichlorohydrin

Jain, S., Zheng, X., Venkatasubbaiah, K., Jones, C. W., Weck, M. & Davis, R. J. 2009 Catalysis of organic reactions. Prunier, M. L. (ed.). Boca Raton: CRC Press, p. 389-398 ISBN 978-2-4200-7076-7

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Catalysts
Kinetics

Synthetic single-stranded DNA topology

Seeman, N. 2009 Applications of knot theory. Buck, D. & Flapan, E. (eds.). p. 121-153 (American Mathematical Society Proceedings of Symposia in Applied Mathematics; vol. 66)

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

DNA
Topology

The perils of polynucleotides revisted

Seeman, N. 2009 Algorithmic processes. Condon, A., Harel, D., Kok, J. N., Salomaa, A. & Winfree, E. (eds.). Springer, p. 205-214

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

2008

DNA nanoarchitectures, DNA nanotechnology, DNA nanotubes, DNA self-assembly

Seeman, N. 2008 Nucleic Acids from A to Z. Muller, S. (ed.). Weinheim: Wiley-VCH, p. 79-80; 81-82; 82; 86

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

DNA
Nanotechnology
Self assembly
Nanotubes
2007

On the use of immobilized metal complex catalysts in organic synthesis

Jones, C. W., Holbach, M., Richardson, J. M., Sommer, W. J., Weck, M., Yu, K. & Zheng, X. 2007 Catalysis of organic reactions. Schmidt, S. R. (ed.). Boca Raton, London, New York: CRC Press, p. 3-12 ISBN 0-8493-7557-6

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Metal complexes
Catalysts
2005

Protein secondary structure mimetics as modulators of protein-protein and protein-ligand interactions

Hamilton, A. 2005 First reference of chemical biology. Schreiber, S., Kapoor, T. & Wess, G. (eds.). Wiley-VCH

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Secondary Protein Structure
Ligands
Proteins
Modulators
2004

DNA nanostructures for mechanics and computing: Nonlinear thinking with life's central molecule

Seeman, N. 2004 NanoBiotechnology. Mirkin, C. & Niemeyer, C. (eds.). Weinheim: Wiley-VCH Verlag GmbH, p. 308-318 Chapter 20

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanostructures
Mechanics
DNA

DNA nanotechnology

Seeman, N. 2004 Encyclopedia of supramolecular chemistry. New York: Marcel Dekker, p. 475-483

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanotechnology
DNA

Optical consequences of dynamic processes at crystal inferfaces

Kahr, B., Kurimoto, M., Kaminsky, W., Jang, S. H. & Benedict, J. 2004 Nanocale structure and assembly of solid-fluid interfaces. Liu, X. Y. & De Yoreo, J. (eds.). Kluwer, Dordrecht

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Crystals

Theoretical dynamics treatment of chemical reactions

Zhang, J., Li, Y. M., Wang, M. L. & Xiang, Y. 2004 Modern trends in chemical reaction dynamics, part I: Experiment and theory. Yang, X. & Liu, K. (eds.). Singapore: World Scientific Publishing, p. 209

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Chemical reactions

Versatile oligo(N-substituted) glycines: The many roles of peptoids in drug discovery

Patch, J. A., Kirshenbaum, K., Seurynck, S. L., Zuckermann, R. N. & Barron, A. E. 2004 Pseudo-peptides in drug development. Nielsen, P. E. (ed.). Weinheim, Germany: Wiley-VCH, p. 1-31

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Amino acids
2003

Dipolar and scalar couplings in NMR of quadrupolar nuclei

Jerschow, A. 2003 Current developments in solid state NMR spectroscopy. Muller, N. & Madhu, P. K. (eds.). Berlin: Springer, p. 1

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nuclear magnetic resonance

Fluorescence sensing of anions

Choi, K. & Hamilton, A. 2003 Encyclopedia of supramolecular chemistry. Atwood, J. L. & Steed, J. W. (eds.). Marcel Dekker

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Negative ions
Fluorescence
2002

Ab initio qm/mm and free energy calculations of enzyme reactions

Zhang, Y., Liu, H. & Yang, W. 2002 Computational methods for macromolecules: Challenges and applications. Schlick, T. & Gan, H. H. (eds.). Springer Verlag, p. 332-354

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Free energy
Enzymes

Organogelators: New supramolecular materials

Melendez, R. & Hamilton, A. 2002 Encyclopedia of smart materials. Biderman, A. (ed.). New York: Wiley, p. 472

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Supramolecular inversion of helical chirality

Holmes, A. E., Barcena, H. S. & Canary, J. 2002 Advances in supramolecular chemistry. Vol. 8, p. 43-78 Invited manuscript

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Chirality
2001

Crystal optics and the symmetry principle: An update

Kaminsky, W. & Kahr, B. 2001 Symmetry 2000. Stockholm: Wenner-Gren Foundation, p. 309-316

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Crystal symmetry
Optics
Crystals

Intrasectoral zoning: Anisotropic organic materials

Gurney, R. W., Kurimoto, M., Subramony, J. A., Bastin, L. & Kahr, B. 2001 Approaches to polar order. Washington, DC: American Chemical Society, Vol. 789, p. 143-156 (ACS Symposium Series)

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Zoning

Meso-scale self-assembly

Gracias, D. H., Choi, I. S., Weck, M. & Whitesides, G. 2001 New directions in algorithms and computational robotics. Donald, B., Lynch, K. & Rus, D. (eds.). A.K. Peters

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Self assembly
2000

Controlling hydrogen bonding: From molecular recognition to organogelation

Melendez, R., Carr, A. J., Linton, B. & Hamilton, A. 2000 Topics in Current Chemistry. Vol. 96, p. 31-61

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Hydrogen bonds

Crystal engineering with soft and topologically adaptable molecular host frameworks

Holman, K. T. & Ward, M. 2000 Stimulating concepts in chemistry. Vogtle, Stoddart & Shibasaki (eds.). Weinheim: Wiley-VCH, p. 221

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Crystal engineering

DNA nanotechnology: From topological control to structural control

Seeman, N. 2000 Pattern formation in biology, vision and dynamics. Carbone, A., Gromov, M. & Pruzinkiewicz, P. (eds.). Singapore: World Scientific Publishing, p. 271-309

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanotechnology
DNA

Farnesyltransferase and geranylgeranyltransferase I inhibitors as novel agents for cancer and cardiovascular diseases

Sebti, S. M. & Hamilton, A. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 197

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nicks, nodes, and new motifs for DNA nanotechnology

Seeman, N. , Mao, C. , Liu, F. , Sha, R. , Yang, X. , Wenzler, L. A. , Li, X. , Shen, Z. , Yan, H. , Sa-Ardyen, P. , Zhang, X. , Shen, W. , Birac, J. J. , Lukeman, P. S. , Pinto, Y. , Qi, J. , Liu, B. , Qiu, H. , Du, S. M. , Wang, H. & 6 others Sun, W., Wang, Y., Fu, T. J., Zhang, Y., Mueller, J. E. & Chen, J. 2000 Frontiers of nano-optoelectronic systems. Pavesi, L. & Buzanova, E. (eds.). Dordrecht: Kluwer, p. 177-198

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanotechnology
DNA

Peptidomimetic-based inhibitors of farnesyltransferase

Knowles, D. B., Rosenberg, S., Sebti, S. M. & Hamilton, A. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 49

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Prenyltransferase inhibitors as radiosensitizers

Bernhard, E. J., Muschel, R. J., Cohen-Jonathan, E., Favre, G., Hamilton, A. & Sebti, S. M. 2000 Farnesyltransferase as a target in anti-cancer drug design. Hamilton, A. D. & Sebti, S. M. (eds.). Humana Press, p. 171

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Protein prenylation in trypanosomatids: A new piggy-back medicinal chemistry target for the development of agents against tropical diseases

Gelb, M. J., Buckner, F. S., Yokoyama, K., Ohkanda, J., Hamilton, A., Nguyen, L., Rossi-Bergmann, B., Stuart, K. D., Sebti, S. M. & Van Voorhis, W. C. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 221

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteins

Protein prenylation in trypanosomatids: A new piggy-back medicinal chemistry target for the development of agents against tropical diseases

Gelb, M. J., Buckner, F. S., Yokoyama, K., Ohkanda, J., Hamilton, A., Nguyen, L., Sebti, S. M. & Van Voorhis, W. C. 2000 Drugs against parasitic diseases. France, 2000

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteins

Role of the peptide bond in protein structure and folding

Kallenbach, N., Bell, A. J. & Spek, E. J. 2000 The amide linkage. Greenberg, A., Breneman, C. M. & Liebman, J. F. (eds.). Wiley-Interscience, p. 599-625

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Peptides
Proteins

Visualization of chemical databases using the singular value decomposition and truncated-Newton minimalization

Xie, D. & Schlick, T. 2000 Optimization in computational chemistry and molecular biology: Local and global approaches. Floudas, C. A. & Pardalos, P. (eds.). Dordrecht, The Netherlands: Kluwer Academic Publishers, p. 267-286

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Singular value decomposition
Visualization
1999

Molecular recognition: Synthetic approaches to artificial receptors

Fan, E. & Hamilton, A. 1999 Crystal engineering. Seddon, K. & Zaworotko, M. (eds.). Kluwer, Vol. 539, p. 357-369

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Molecular recognition

Protein surface recognition

Salvatella, X., Haack, T., Gairí, M., De Mendoza, J., Peczuh, M. W., Hamilton, A. & Giralt, E. 1999 Protein surface recognition. Pons, M. (ed.). Kluwer, Vol. 526, p. 267-280

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteins

Protein surface recognition by synthetic receptors

Lin, Q., Park, H. S., Hamuro, Y. & Hamilton, A. 1999 Supramolecular chemistry: Where it is and where it is going. Urgaro, R. (ed.). Amsterdam: Kluwer, Vol. 527, p. 197-204

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteins

Self-assembling structures based on hydrogen bonding subunits

Zafar, A. & Hamilton, A. 1999 Problems in the synthesis and characterization of large molecular assemblies. Tsoucaris, G. (ed.). Kluwer, p. 67-85

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Hydrogen bonds

Structures, vibrational frequency shifts and photodissociation dynamics of ArnHF clusters

Bacic, Z. 1999 Theory of atomic and molecular clusters. Jellinek, J. (ed.). Berlin: Springer , p. 54-85

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Photodissociation
Vibrational spectra

Surfactant enhanced spreading

Stoebe, T., Hill, R. M., Ward, M., Scriven, L. E. & Davis, H. T. 1999 Silicone surfactants. Hill, R. M. (ed.). New York: Marcel Dekker, (Surfactant Science Series; vol. 86)

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Surface active agents

Synthetic DNA topology

Seeman, N. 1999 Molecular catenanes, rotaxanes and knots. Sauvage, J-P. & Dietrich-Buchecker, C. (eds.). Weinheim: Wiley-VCH, p. 323-356

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

DNA
Topology

Towards artificial antibodies: Protein surface recognition by synthetic receptors

Hamilton, A., Park, H. S., Lin, Q. & Jain, R. 1999 Peptides for the new millenium. Fields, G. B. & Tam, J. P. (eds.). Dordrecht: Kluwer, p. 531

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Antibodies
1998

A bottom-up approach to nanotechnology using DNA

Seeman, N. , Chen, J. , Zhang, Y. , Liu, B. , Qiu, H. , Fu, T. J. , Wang, Y. , Li, X. , Yang, X. , Qi, J. , Liu, F. , Wenzler, L. A. , Du, S. M. , Mueller, J. E. , Wang, H. , Mao, C. , Sun, W. , Shen, Z. , Wong, M. H. , Yan, H. & 1 others Sha, R. 1998 Biological molecules in nanotechnology. Lee, S. C. (ed.). Southborough, MA: IBC Libraries, p. 45-58

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanotechnology
DNA

DNA nanotechnology

Seeman, N. 1998 WTEC workshop report on R & D status and trends in nanoparticles, nanostructured materials, and nanodevices in the United States. Siegel, R. W., Hu, E. & Roco, M. C. (eds.). Baltimore: International Technology Research Institute, http://itri.loyola.edu/nano/us_r_n_d/09_04.htm

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Nanotechnology
DNA

Geometry optimization

Schlick, T. 1998 Encyclopedia of computational chemistry. von Rague Schleyer, P., Allinger, N. L., Clark, T., Gasteiger, J., Kollman, P. A. & Schaefer III, H. F. (eds.). West Sussex: John Wiley and Sons, Vol. 2, p. 1136-1157

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Geometry