Research Output 1960 2017

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Chapter (peer-reviewed)
2015

Supramolecular polymers engineered via olefin metathesis

Elacqua, E., Ten Brummelhuis, N. & Weck, M. 2015 Handbook of metathesis. Grubbs (ed.). p. 71-92

Research output: Research - peer-reviewChapter (peer-reviewed)

2014

Computational techniques for density functional based molecular dynamics calculations in plane-wave and localized basis sets

Tzanov, A. T. & Tuckerman, M. 2014 Many-electron approaches in physics, chemistry and mathematics. Berlin: Springer, p. 261-283

Research output: Research - peer-reviewChapter (peer-reviewed)

Oxidation adjacent to C=X bonds by dehydration

Shannon, S. & Diao, T. 2014 Comprehensive organic synthesis II. Knochel, P. & Molander, G. A. (eds.). Elsevier Comp. Org. Synth., Vol. 7, p. 178-212

Research output: Research - peer-reviewChapter (peer-reviewed)

2012

Designing a sustainable and stretchable "fox testicle" ice cream

Johnson, A., Kirshenbaum, K. & McBride, A. E. 2012 The kitchen as laboratory. Vega, C., Ubbink, J. & van der Linden, E. (eds.). New York: Columbia University Press

Research output: Research - peer-reviewChapter (peer-reviewed)

DNA crystals, constructs and devices

Seeman, N., Birktoft, J. J., Sha, R., Gu, H., Wang, T., Zheng, J., Chao, J., Constantinou, P. E., Ding, B. & Mao, C. 2012 Handbook of neuroscience, engineering and technology. Goddard III, W. A., Brenner, D. W., Lyshevski, S. E. & Iafrate, G. J. (eds.). 3rd ed. New York: CRC Press, p. 1037-1049

Research output: Research - peer-reviewChapter (peer-reviewed)

Histories of crystallography by Shafranovskii and Schuh

Kahr, B. & Shtukenberg, A. G. 2012 Recent advances in crystallography. Benedict, J. B. (ed.). p. 1-34

Research output: Research - peer-reviewChapter (peer-reviewed)

2009

Ab initio quantum mechanical/molecular mechanical studies of histone modifying enzymes

Zhang, Y. 2009 Multi-scale quantum models for biocatalysis: Modern techniques and applications. York, D. M. & Lee, T-S. (eds.). New York: Springer Verlag, p. 341-350

Research output: Research - peer-reviewChapter (peer-reviewed)

Colourful world of dyeing crystals

Brustolon, M. & Kahr, B. 2009 The treasures of eureka. Electron paramagnetic resonance spectroscopy: From fundamental research to pioneering applications. Salikhov, K. M. (ed.). New Zealand: Axas Publishing

Research output: Research - peer-reviewChapter (peer-reviewed)

Investigation of deactivation of co-salen catalysts in the hydrolytic kinetic resolution of epichlorohydrin

Jain, S., Zheng, X., Venkatasubbaiah, K., Jones, C. W., Weck, M. & Davis, R. J. 2009 Catalysis of organic reactions. Prunier, M. L. (ed.). Boca Raton: CRC Press, p. 389-398 ISBN 978-2-4200-7076-7

Research output: Research - peer-reviewChapter (peer-reviewed)

Synthetic single-stranded DNA topology

Seeman, N. 2009 Applications of knot theory. Buck, D. & Flapan, E. (eds.). p. 121-153 (American Mathematical Society Proceedings of Symposia in Applied Mathematics; vol. 66)

Research output: Research - peer-reviewChapter (peer-reviewed)

The perils of polynucleotides revisted

Seeman, N. 2009 Algorithmic processes. Condon, A., Harel, D., Kok, J. N., Salomaa, A. & Winfree, E. (eds.). Springer, p. 205-214

Research output: Research - peer-reviewChapter (peer-reviewed)

2008

DNA nanoarchitectures, DNA nanotechnology, DNA nanotubes, DNA self-assembly

Seeman, N. 2008 Nucleic Acids from A to Z. Muller, S. (ed.). Weinheim: Wiley-VCH, p. 79-80; 81-82; 82; 86

Research output: Research - peer-reviewChapter (peer-reviewed)

2007

On the use of immobilized metal complex catalysts in organic synthesis

Jones, C. W., Holbach, M., Richardson, J. M., Sommer, W. J., Weck, M., Yu, K. & Zheng, X. 2007 Catalysis of organic reactions. Schmidt, S. R. (ed.). Boca Raton, London, New York: CRC Press, p. 3-12 ISBN 0-8493-7557-6

Research output: Research - peer-reviewChapter (peer-reviewed)

2005

Protein secondary structure mimetics as modulators of protein-protein and protein-ligand interactions

Hamilton, A. 2005 First reference of chemical biology. Schreiber, S., Kapoor, T. & Wess, G. (eds.). Wiley-VCH

Research output: Research - peer-reviewChapter (peer-reviewed)

2004

DNA nanostructures for mechanics and computing: Nonlinear thinking with life's central molecule

Seeman, N. 2004 NanoBiotechnology. Mirkin, C. & Niemeyer, C. (eds.). Weinheim: Wiley-VCH Verlag GmbH, p. 308-318 Chapter 20

Research output: Research - peer-reviewChapter (peer-reviewed)

DNA nanotechnology

Seeman, N. 2004 Encyclopedia of supramolecular chemistry. New York: Marcel Dekker, p. 475-483

Research output: Research - peer-reviewChapter (peer-reviewed)

Optical consequences of dynamic processes at crystal inferfaces

Kahr, B., Kurimoto, M., Kaminsky, W., Jang, S. H. & Benedict, J. 2004 Nanocale structure and assembly of solid-fluid interfaces. Liu, X. Y. & De Yoreo, J. (eds.). Kluwer, Dordrecht

Research output: Research - peer-reviewChapter (peer-reviewed)

Theoretical dynamics treatment of chemical reactions

Zhang, J., Li, Y. M., Wang, M. L. & Xiang, Y. 2004 Modern trends in chemical reaction dynamics, part I: Experiment and theory. Yang, X. & Liu, K. (eds.). Singapore: World Scientific Publishing, p. 209

Research output: Research - peer-reviewChapter (peer-reviewed)

Versatile oligo(N-substituted) glycines: The many roles of peptoids in drug discovery

Patch, J. A., Kirshenbaum, K., Seurynck, S. L., Zuckermann, R. N. & Barron, A. E. 2004 Pseudo-peptides in drug development. Nielsen, P. E. (ed.). Weinheim, Germany: Wiley-VCH, p. 1-31

Research output: Research - peer-reviewChapter (peer-reviewed)

2003

Dipolar and scalar couplings in NMR of quadrupolar nuclei

Jerschow, A. 2003 Current developments in solid state NMR spectroscopy. Muller, N. & Madhu, P. K. (eds.). Berlin: Springer, p. 1

Research output: Research - peer-reviewChapter (peer-reviewed)

Fluorescence sensing of anions

Choi, K. & Hamilton, A. 2003 Encyclopedia of supramolecular chemistry. Atwood, J. L. & Steed, J. W. (eds.). Marcel Dekker

Research output: Research - peer-reviewChapter (peer-reviewed)

2002

Ab initio qm/mm and free energy calculations of enzyme reactions

Zhang, Y., Liu, H. & Yang, W. 2002 Computational methods for macromolecules: Challenges and applications. Schlick, T. & Gan, H. H. (eds.). Springer Verlag, p. 332-354

Research output: Research - peer-reviewChapter (peer-reviewed)

Organogelators: New supramolecular materials

Melendez, R. & Hamilton, A. 2002 Encyclopedia of smart materials. Biderman, A. (ed.). New York: Wiley, p. 472

Research output: Research - peer-reviewChapter (peer-reviewed)

Supramolecular inversion of helical chirality

Holmes, A. E., Barcena, H. S. & Canary, J. 2002 Advances in supramolecular chemistry. Vol. 8, p. 43-78 Invited manuscript

Research output: Research - peer-reviewChapter (peer-reviewed)

2001

Crystal optics and the symmetry principle: An update

Kaminsky, W. & Kahr, B. 2001 Symmetry 2000. Stockholm: Wenner-Gren Foundation, p. 309-316

Research output: Research - peer-reviewChapter (peer-reviewed)

Intrasectoral zoning: Anisotropic organic materials

Gurney, R. W., Kurimoto, M., Subramony, J. A., Bastin, L. & Kahr, B. 2001 Approaches to polar order. Washington, DC: American Chemical Society, Vol. 789, p. 143-156 (ACS Symposium Series)

Research output: Research - peer-reviewChapter (peer-reviewed)

Meso-scale self-assembly

Gracias, D. H., Choi, I. S., Weck, M. & Whitesides, G. 2001 New directions in algorithms and computational robotics. Donald, B., Lynch, K. & Rus, D. (eds.). A.K. Peters

Research output: Research - peer-reviewChapter (peer-reviewed)

2000

Controlling hydrogen bonding: From molecular recognition to organogelation

Melendez, R., Carr, A. J., Linton, B. & Hamilton, A. 2000 Topics in Current Chemistry. Vol. 96, p. 31-61

Research output: Research - peer-reviewChapter (peer-reviewed)

Crystal engineering with soft and topologically adaptable molecular host frameworks

Holman, K. T. & Ward, M. 2000 Stimulating concepts in chemistry. Vogtle, Stoddart & Shibasaki (eds.). Weinheim: Wiley-VCH, p. 221

Research output: Research - peer-reviewChapter (peer-reviewed)

DNA nanotechnology: From topological control to structural control

Seeman, N. 2000 Pattern formation in biology, vision and dynamics. Carbone, A., Gromov, M. & Pruzinkiewicz, P. (eds.). Singapore: World Scientific Publishing, p. 271-309

Research output: Research - peer-reviewChapter (peer-reviewed)

Farnesyltransferase and geranylgeranyltransferase I inhibitors as novel agents for cancer and cardiovascular diseases

Sebti, S. M. & Hamilton, A. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 197

Research output: Research - peer-reviewChapter (peer-reviewed)

Nicks, nodes, and new motifs for DNA nanotechnology

Seeman, N. , Mao, C. , Liu, F. , Sha, R. , Yang, X. , Wenzler, L. A. , Li, X. , Shen, Z. , Yan, H. , Sa-Ardyen, P. , Zhang, X. , Shen, W. , Birac, J. J. , Lukeman, P. S. , Pinto, Y. , Qi, J. , Liu, B. , Qiu, H. , Du, S. M. , Wang, H. & 6 others Sun, W., Wang, Y., Fu, T. J., Zhang, Y., Mueller, J. E. & Chen, J. 2000 Frontiers of nano-optoelectronic systems. Pavesi, L. & Buzanova, E. (eds.). Dordrecht: Kluwer, p. 177-198

Research output: Research - peer-reviewChapter (peer-reviewed)

Peptidomimetic-based inhibitors of farnesyltransferase

Knowles, D. B., Rosenberg, S., Sebti, S. M. & Hamilton, A. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 49

Research output: Research - peer-reviewChapter (peer-reviewed)

Prenyltransferase inhibitors as radiosensitizers

Bernhard, E. J., Muschel, R. J., Cohen-Jonathan, E., Favre, G., Hamilton, A. & Sebti, S. M. 2000 Farnesyltransferase as a target in anti-cancer drug design. Hamilton, A. D. & Sebti, S. M. (eds.). Humana Press, p. 171

Research output: Research - peer-reviewChapter (peer-reviewed)

Protein prenylation in trypanosomatids: A new piggy-back medicinal chemistry target for the development of agents against tropical diseases

Gelb, M. J., Buckner, F. S., Yokoyama, K., Ohkanda, J., Hamilton, A., Nguyen, L., Rossi-Bergmann, B., Stuart, K. D., Sebti, S. M. & Van Voorhis, W. C. 2000 Farnesyltransferase as a target in anti-cancer drug design. Sebti, S. M. & Hamilton, A. D. (eds.). Humana Press, p. 221

Research output: Research - peer-reviewChapter (peer-reviewed)

Protein prenylation in trypanosomatids: A new piggy-back medicinal chemistry target for the development of agents against tropical diseases

Gelb, M. J., Buckner, F. S., Yokoyama, K., Ohkanda, J., Hamilton, A., Nguyen, L., Sebti, S. M. & Van Voorhis, W. C. 2000 Drugs against parasitic diseases. France, 2000

Research output: Research - peer-reviewChapter (peer-reviewed)

Role of the peptide bond in protein structure and folding

Kallenbach, N., Bell, A. J. & Spek, E. J. 2000 The amide linkage. Greenberg, A., Breneman, C. M. & Liebman, J. F. (eds.). Wiley-Interscience, p. 599-625

Research output: Research - peer-reviewChapter (peer-reviewed)

Visualization of chemical databases using the singular value decomposition and truncated-Newton minimalization

Xie, D. & Schlick, T. 2000 Optimization in computational chemistry and molecular biology: Local and global approaches. Floudas, C. A. & Pardalos, P. (eds.). Dordrecht, The Netherlands: Kluwer Academic Publishers, p. 267-286

Research output: Research - peer-reviewChapter (peer-reviewed)

1999

Molecular recognition: Synthetic approaches to artificial receptors

Fan, E. & Hamilton, A. 1999 Crystal engineering. Seddon, K. & Zaworotko, M. (eds.). Kluwer, Vol. 539, p. 357-369

Research output: Research - peer-reviewChapter (peer-reviewed)

Protein surface recognition

Salvatella, X., Haack, T., Gairí, M., De Mendoza, J., Peczuh, M. W., Hamilton, A. & Giralt, E. 1999 Protein surface recognition. Pons, M. (ed.). Kluwer, Vol. 526, p. 267-280

Research output: Research - peer-reviewChapter (peer-reviewed)

Protein surface recognition by synthetic receptors

Lin, Q., Park, H. S., Hamuro, Y. & Hamilton, A. 1999 Supramolecular chemistry: Where it is and where it is going. Urgaro, R. (ed.). Amsterdam: Kluwer, Vol. 527, p. 197-204

Research output: Research - peer-reviewChapter (peer-reviewed)

Self-assembling structures based on hydrogen bonding subunits

Zafar, A. & Hamilton, A. 1999 Problems in the synthesis and characterization of large molecular assemblies. Tsoucaris, G. (ed.). Kluwer, p. 67-85

Research output: Research - peer-reviewChapter (peer-reviewed)

Structures, vibrational frequency shifts and photodissociation dynamics of ArnHF clusters

Bacic, Z. 1999 Theory of atomic and molecular clusters. Jellinek, J. (ed.). Berlin: Springer , p. 54-85

Research output: Research - peer-reviewChapter (peer-reviewed)

Surfactant enhanced spreading

Stoebe, T., Hill, R. M., Ward, M., Scriven, L. E. & Davis, H. T. 1999 Silicone surfactants. Hill, R. M. (ed.). New York: Marcel Dekker, (Surfactant Science Series; vol. 86)

Research output: Research - peer-reviewChapter (peer-reviewed)

Synthetic DNA topology

Seeman, N. 1999 Molecular catenanes, rotaxanes and knots. Sauvage, J-P. & Dietrich-Buchecker, C. (eds.). Weinheim: Wiley-VCH, p. 323-356

Research output: Research - peer-reviewChapter (peer-reviewed)

Towards artificial antibodies: Protein surface recognition by synthetic receptors

Hamilton, A., Park, H. S., Lin, Q. & Jain, R. 1999 Peptides for the new millenium. Fields, G. B. & Tam, J. P. (eds.). Dordrecht: Kluwer, p. 531

Research output: Research - peer-reviewChapter (peer-reviewed)

1998

A bottom-up approach to nanotechnology using DNA

Seeman, N. , Chen, J. , Zhang, Y. , Liu, B. , Qiu, H. , Fu, T. J. , Wang, Y. , Li, X. , Yang, X. , Qi, J. , Liu, F. , Wenzler, L. A. , Du, S. M. , Mueller, J. E. , Wang, H. , Mao, C. , Sun, W. , Shen, Z. , Wong, M. H. , Yan, H. & 1 others Sha, R. 1998 Biological molecules in nanotechnology. Lee, S. C. (ed.). Southborough, MA: IBC Libraries, p. 45-58

Research output: Research - peer-reviewChapter (peer-reviewed)

DNA nanotechnology

Seeman, N. 1998 WTEC workshop report on R & D status and trends in nanoparticles, nanostructured materials, and nanodevices in the United States. Siegel, R. W., Hu, E. & Roco, M. C. (eds.). Baltimore: International Technology Research Institute, http://itri.loyola.edu/nano/us_r_n_d/09_04.htm

Research output: Research - peer-reviewChapter (peer-reviewed)

Geometry optimization

Schlick, T. 1998 Encyclopedia of computational chemistry. von Rague Schleyer, P., Allinger, N. L., Clark, T., Gasteiger, J., Kollman, P. A. & Schaefer III, H. F. (eds.). West Sussex: John Wiley and Sons, Vol. 2, p. 1136-1157

Research output: Research - peer-reviewChapter (peer-reviewed)

Hydrogen-bonded ribbons, tapes and sheets as motifs for crystal engineering

Melendez, R. & Hamilton, A. 1998 Design of organic solids. p. 97-129 doi: 10.1007/3-540-69178-2_3. (Topics in Current Chemistry; vol. 198)

Research output: Research - peer-reviewChapter (peer-reviewed)