Research output per year
Research output per year
- 1 - 50 out of 170 results
Search results
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2024
Causal connectivity measures for pulse-output network reconstruction: Analysis and applications
Tian, Z. Q. K., Chen, K., Li, S., McLaughlin, D. W. & Zhou, D., Apr 2 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 14, e2305297121.Research output: Contribution to journal › Article › peer-review
Open Access -
2023
Mathematical Modeling and Analysis of Spatial Neuron Dynamics: Dendritic Integration and Beyond
Li, S., McLaughlin, D. W. & Zhou, D., Jan 2023, In: Communications on Pure and Applied Mathematics. 76, 1, p. 114-162Research output: Contribution to journal › Article › peer-review
Open Access -
2020
A Combined Offline–Online Algorithm for Hodgkin–Huxley Neural Networks
Tian, Z. Q. K., Crodelle, J. & Zhou, D., Jul 1 2020, In: Journal of Scientific Computing. 84, 1, 10.Research output: Contribution to journal › Article › peer-review
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A computational investigation of electrotonic coupling between pyramidal cells in the cortex
Crodelle, J., Zhou, D., Kovačič, G. & Cai, D., Nov 1 2020, In: Journal of Computational Neuroscience. 48, 4, p. 387-407 21 p.Research output: Contribution to journal › Article › peer-review
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Exponential Time Differencing Algorithm for Pulse-Coupled Hodgkin-Huxley Neural Networks
Tian, Z. Q. K. & Zhou, D., May 8 2020, In: Frontiers in Computational Neuroscience. 14, 40.Research output: Contribution to journal › Article › peer-review
Open Access -
Free Energy Calculations on the Water-Chain-Assisted and the Dehydration Mechanisms of Transmembrane Ion Permeation
Guan, X., Wei, D. Q. & Hu, D., Jan 14 2020, In: Journal of chemical theory and computation. 16, 1, p. 700-710 11 p.Research output: Contribution to journal › Article › peer-review
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Neural networks of different species, brain areas and states can be characterized by the probability polling state
Xu, Z. Q. J., Gu, X., Li, C., Cai, D., Zhou, D. & McLaughlin, D. W., Oct 1 2020, In: European Journal of Neuroscience. 52, 7, p. 3790-3802 13 p.Research output: Contribution to journal › Article › peer-review
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Ring models of binocular rivalry and fusion
Wang, Z., Dai, W. & McLaughlin, D. W., May 1 2020, In: Journal of Computational Neuroscience. 48, 2, p. 193-211 19 p.Research output: Contribution to journal › Article › peer-review
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2019
A cautionary tale of entropic criteria in assessing the validity of the maximum entropy principle
Xu, Z. Q. J., Xu, F., Bi, G., Zhou, D. & Cai, D., 2019, In: Europhysics Letters. 126, 3, 38005.Research output: Contribution to journal › Article › peer-review
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An experimentally validated approach to calculate the blood-brain barrier permeability of small molecules
Wang, Y., Gallagher, E., Jorgensen, C., Troendle, E. P., Hu, D., Searson, P. C. & Ulmschneider, M. B., Dec 1 2019, In: Scientific reports. 9, 1, 6117.Research output: Contribution to journal › Article › peer-review
Open Access -
An optimization principle for initiation and adaptation of biological transport networks
Hu, D. & Cai, D., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1427-1436 10 p.Research output: Contribution to journal › Article › peer-review
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A role for electrotonic coupling between cortical pyramidal cells
Crodelle, J., Zhou, D., Kovačič, G. & Cai, D., May 24 2019, In: Frontiers in Computational Neuroscience. 13, 33.Research output: Contribution to journal › Article › peer-review
Open Access -
Asymmetric behavior of surface waves induced by an underlying interfacial wave
Jiang, S. W., Kovačič, G. & Zhou, D., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1333-1351 19 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Balanced active core in heterogeneous neuronal networks
Gu, Q. L. L., Li, S., Dai, W. P., Zhou, D. & Cai, D., Jan 2019, In: Frontiers in Computational Neuroscience. 12, 109.Research output: Contribution to journal › Article › peer-review
Open Access -
Compressive sensing inference of neuronal network connectivity in balanced neuronal dynamics
Barranca, V. J. & Zhou, D., 2019, In: Frontiers in Neuroscience. 13, OCT, 1101.Research output: Contribution to journal › Article › peer-review
Open Access -
Dendritic computations captured by an effective point neuron model
Li, S., Liu, N., Zhang, X., McLaughlin, D. W., Zhou, D. & Cai, D., Jul 23 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 30, p. 15244-15252 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Determination of effective synaptic conductances using somatic voltage clamp
Li, S., Liu, N., Li, Y., Zhang, X., Zhou, D. & Cai, D., Mar 2019, In: PLoS computational biology. 15, 3, e1006871.Research output: Contribution to journal › Article › peer-review
Open Access -
Dynamical and coupling structure of pulse-coupled networks in maximum entropy analysis
Xu, Z. Q. J., Zhou, D. & Cai, D., Jan 1 2019, In: Entropy. 21, 1, 76.Research output: Contribution to journal › Article › peer-review
Open Access -
Effective dispersion in the focusing nonlinear Schrödinger equation
Leisman, K. P., Zhou, D., Banks, J. W., Kovačič, G. & Cai, D., Aug 19 2019, In: Physical Review E. 100, 2, 022215.Research output: Contribution to journal › Article › peer-review
Open Access -
Emergence of spatially periodic diffusive waves in small-world neuronal networks
Gu, Q. L., Xiao, Y., Li, S. & Zhou, D., Oct 1 2019, In: Physical Review E. 100, 4, 042401.Research output: Contribution to journal › Article › peer-review
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Fast algorithms for simulation of neuronal dynamics based on the bilinear dendritic integration rule
Dai, W. P., Li, S. & Zhou, D., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1313-1331 19 p.Research output: Contribution to journal › Article › peer-review
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Finite-Temperature Dimer Method for Finding Saddle Points on Free Energy Surfaces
Zhang, H., Qiu, L. & Hu, D., Jul 5 2019, In: Journal of Computational Chemistry. 40, 18, p. 1701-1706 6 p.Research output: Contribution to journal › Article › peer-review
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Free Energy Calculation of Transmembrane Ion Permeation: Sample with a Single Reaction Coordinate and Analysis along Transition Path
Guan, X., Wei, D. & Hu, D., Feb 12 2019, In: Journal of chemical theory and computation. 15, 2, p. 1216-1225 10 p.Research output: Contribution to journal › Article › peer-review
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Maximum entropy principle analysis in network systems with short-time recordings
Xu, Z. Q. J., Crodelle, J., Zhou, D. & Cai, D., Feb 19 2019, In: Physical Review E. 99, 2, 022409.Research output: Contribution to journal › Article › peer-review
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Modulation-resonance mechanism for surface waves in a two-layer fluid system
Jiang, S. W., Kovačič, G., Zhou, D. & Cai, D., Sep 25 2019, In: Journal of Fluid Mechanics. 875, p. 807-841 35 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Representing conditional Granger causality by vector auto-regressive parameters
Xiao, Y., Li, S. & Zhou, D., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1353-1386 34 p.Research output: Contribution to journal › Article › peer-review
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The evolution of large-scale modeling of monkey primary visual cortex, V1: Steps towards understanding cortical function
Young, L. S., Tao, L., Shelley, M., Shapley, R., Rangan, A. & Mclaughlin, D. W., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1387-1406 20 p.Research output: Contribution to journal › Article › peer-review
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The role of sparsity in inverse problems for networks with nonlinear dynamics
Barranca, V. J., Kovačič, G. & Zhou, D., 2019, In: Communications in Mathematical Sciences. 17, 5, p. 1291-1311 21 p.Research output: Contribution to journal › Article › peer-review
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2018
Causal inference in nonlinear systems: Granger causality versus time-delayed mutual information
Li, S., Xiao, Y., Zhou, D. & Cai, D., May 29 2018, In: Physical Review E. 97, 5, 052216.Research output: Contribution to journal › Article › peer-review
Open Access -
Effects of firing variability on network structures with spike-timing-dependent plasticity
Min, B., Zhou, D. & Cai, D., Jan 23 2018, In: Frontiers in Computational Neuroscience. 12, 1.Research output: Contribution to journal › Article › peer-review
Open Access -
Mechanisms underlying contrast-dependent orientation selectivity in mouse V1
Dai, W. P., Zhou, D., McLaughlin, D. W. & Cai, D., Nov 6 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 45, p. 11619-11624 6 p.Research output: Contribution to journal › Article › peer-review
Open Access -
The dynamics of balanced spiking neuronal networks under poisson drive is not chaotic
Gu, Q. L. L., Tian, Z. Q. K., Kovačič, G., Zhou, D. & Cai, D., Jun 28 2018, In: Frontiers in Computational Neuroscience. 12, 47.Research output: Contribution to journal › Article › peer-review
Open Access -
Weighted least square analysis method for free energy calculations
Hu, D., Guan, X. & Wang, Y., Oct 30 2018, In: Journal of Computational Chemistry. 39, 28, p. 2397-2404 8 p.Research output: Contribution to journal › Article › peer-review
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2017
A dynamical state underlying the second order maximum entropy principle in neuronal networks
Xu, Z. Q. J., Bi, G., Zhou, D. & Cai, D., 2017, In: Communications in Mathematical Sciences. 15, 3, p. 665-692 28 p.Research output: Contribution to journal › Article › peer-review
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Spike-triggered regression for synaptic connectivity reconstruction in neuronal networks
Zhang, Y., Xiao, Y., Zhou, D. & Cai, D., Nov 8 2017, In: Frontiers in Computational Neuroscience. 11, 101.Research output: Contribution to journal › Article › peer-review
Open Access -
The characterization of hippocampal theta-driving neurons-A time-delayed mutual information approach
Li, S., Xu, J., Chen, G., Lin, L., Zhou, D. & Cai, D., Dec 1 2017, In: Scientific reports. 7, 1, 5637.Research output: Contribution to journal › Article › peer-review
Open Access -
2016
A fast algorithm for the simulation of arterial pulse waves
Du, T., Hu, D. & Cai, D., Jun 1 2016, In: Journal of Computational Physics. 314, p. 450-464 15 p.Research output: Contribution to journal › Article › peer-review
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Compressive sensing reconstruction of feed-forward connectivity in pulse-coupled nonlinear networks
Barranca, V. J., Zhou, D. & Cai, D., Jun 16 2016, In: Physical Review E. 93, 6, 060201.Research output: Contribution to journal › Article › peer-review
Open Access -
Efficient image processing via compressive sensing of integrate-and-fire neuronal network dynamics
Barranca, V. J., Kovačič, G., Zhou, D. & Cai, D., Jan 1 2016, In: Neurocomputing. 171, p. 1313-1322 10 p.Research output: Contribution to journal › Article › peer-review
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Granger causality analysis with nonuniform sampling and its application to pulse-coupled nonlinear dynamics
Zhang, Y., Xiao, Y., Zhou, D. & Cai, D., Apr 26 2016, In: Physical Review E. 93, 4, 042217.Research output: Contribution to journal › Article › peer-review
Open Access -
Improved Compressive Sensing of Natural Scenes Using Localized Random Sampling
Barranca, V. J., Kovacic, G., Zhou, D. & Cai, D., Aug 24 2016, In: Scientific reports. 6, 31976.Research output: Contribution to journal › Article › peer-review
Open Access -
Passive Transmembrane Permeation Mechanisms of Monovalent Ions Explored by Molecular Dynamics Simulations
Zhang, H. Y., Xu, Q., Wang, Y. K., Zhao, T. Z., Hu, D. & Wei, D. Q., Oct 11 2016, In: Journal of chemical theory and computation. 12, 10, p. 4959-4969 11 p.Research output: Contribution to journal › Article › peer-review
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Spontaneous formation of structurally diverse membrane channel architectures from a single antimicrobial peptide
Wang, Y., Chen, C. H., Hu, D., Ulmschneider, M. B. & Ulmschneider, J. P., Nov 22 2016, In: Nature communications. 7, 13535.Research output: Contribution to journal › Article › peer-review
Open Access -
Stochastic linearization of turbulent dynamics of dispersive waves in equilibrium and non-equilibrium state
Jiang, S. W., Lu, H., Zhou, D. & Cai, D., Aug 2016, In: New Journal of Physics. 18, 8, 083028.Research output: Contribution to journal › Article › peer-review
Open Access -
2015
A novel characterization of amalgamated networks in natural systems
Barranca, V. J., Zhou, D. & Cai, D., Jun 2 2015, In: Scientific reports. 5, 10611.Research output: Contribution to journal › Article › peer-review
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Low-rank network decomposition reveals structural characteristics of small-world networks
Barranca, V. J., Zhou, D. & Cai, D., Dec 21 2015, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 92, 6, 062822.Research output: Contribution to journal › Article › peer-review
Open Access -
2014
A coarse-grained framework for spiking neuronal networks: Between homogeneity and synchrony
Zhang, J., Zhou, D., Cai, D. & Rangan, A. V., Aug 2014, In: Journal of Computational Neuroscience. 37, 1, p. 81-104 24 p.Research output: Contribution to journal › Article › peer-review
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Distribution of correlated spiking events in a population-based approach for Integrate-and-Fire networks
Zhang, J., Newhall, K., Zhou, D. & Rangan, A., Apr 2014, In: Journal of Computational Neuroscience. 36, 2, p. 279-295 17 p.Research output: Contribution to journal › Article › peer-review
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Network dynamics for optimal compressive-sensing input-signal recovery
Barranca, V. J., Kovačič, G., Zhou, D. & Cai, D., Oct 9 2014, In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 90, 4, 42908.Research output: Contribution to journal › Article › peer-review
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Sparsity and Compressed Coding in Sensory Systems
Barranca, V. J., Kovačič, G., Zhou, D. & Cai, D., Aug 21 2014, In: PLoS computational biology. 10, 8, e1003793.Research output: Contribution to journal › Article › peer-review