Courant Institute

Research Output

2020

A Compact Eulerian Representation of Axisymmetric Inviscid Vortex Sheet Dynamics

Pesci, A. I., Goldstein, R. E. & Shelley, M. J., Feb 1 2020, In : Communications on Pure and Applied Mathematics. 73, 2, p. 239-256 18 p.

Research output: Contribution to journalArticle

Open Access

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access

Adaptive Hybridizable Discontinuous Galerkin discretization of the Grad–Shafranov equation by extension from polygonal subdomains

Sánchez-Vizuet, T., Solano, M. E. & Cerfon, A. J., Jan 1 2020, (Accepted/In press) In : Computer Physics Communications. 107239.

Research output: Contribution to journalArticle

A fast boundary integral method for high-order multiscale mesh generation

Vico, F., Greengard, L., O'Neil, M. & Rachh, M., Jan 1 2020, In : SIAM Journal on Scientific Computing. 42, 2, p. A1380-A1401

Research output: Contribution to journalArticle

A fast solver for the narrow capture and narrow escape problems in the sphere

Kaye, J. & Greengard, L., Jan 2020, In : Journal of Computational Physics: X. 5, 100047.

Research output: Contribution to journalArticle

Open Access

A Gaussian Process Related to the Mass Spectrum of the Near-Critical Ising Model

Camia, F., Jiang, J. & Newman, C. M., May 1 2020, In : Journal of Statistical Physics. 179, 4, p. 885-900 16 p.

Research output: Contribution to journalArticle

Algebraically hyperbolic manifolds have finite automorphism groups

Bogomolov, F. A., Kamenova, L. & Verbitsky, M., Mar 1 2020, In : Communications in Contemporary Mathematics. 22, 2, 1950003.

Research output: Contribution to journalArticle

Analysis, Simulation, and Optimization of Stochastic Vesicle Dynamics in Synaptic Transmission

Zhang, C. & Peskin, C. S., Jan 1 2020, In : Communications on Pure and Applied Mathematics. 73, 1, p. 3-62 60 p.

Research output: Contribution to journalArticle

Analysis of the gradient method with an Armijo–Wolfe line search on a class of non-smooth convex functions

Asl, A. & Overton, M. L., Mar 3 2020, In : Optimization Methods and Software. 35, 2, p. 223-242 20 p.

Research output: Contribution to journalArticle

Analyticity up to the boundary for the stokes and the Navier-Stokes systems

Camliyurt, G., Kukavica, I. & Vicol, V., Jan 1 2020, In : Transactions of the American Mathematical Society. 373, 5, p. 3375-3422 48 p.

Research output: Contribution to journalArticle

An automatic method for black margin elimination of Sentinel-1A images over Antarctica

Wang, X. & Holland, D. M., Apr 1 2020, In : Remote Sensing. 12, 7, 1175.

Research output: Contribution to journalArticle

Open Access

A scalable computational platform for particulate Stokes suspensions

Yan, W., Corona, E., Malhotra, D., Veerapaneni, S. & Shelley, M., Sep 1 2020, In : Journal of Computational Physics. 416, 109524.

Research output: Contribution to journalArticle

A stable and effective learning strategy for trainable greedy decoding

Chen, Y., Li, V. O. K., Cho, K. & Bowman, S. R., Jan 1 2020, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 380-390 11 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Asymptotics in percolation on high-girth expanders

Krivelevich, M., Lubetzky, E. & Sudakov, B., Jul 1 2020, In : Random Structures and Algorithms. 56, 4, p. 927-947 21 p.

Research output: Contribution to journalArticle

A truthful cardinal mechanism for one-sided matching

Abebe, R., Cole, R., Gkatzelis, V. & Hartline, J. D., Jan 1 2020, 31st Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2020. Chawla, S. (ed.). Association for Computing Machinery, p. 2096-2113 18 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms; vol. 2020-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Attention-based CNN for KL Grade Classification: Data from the Osteoarthritis Initiative

Zhang, B., Tan, J., Cho, K., Chang, G. & Deniz, C. M., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 731-735 5 p. 9098456. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Better together: Elements of successful scientific software development in a distributed collaborative community

RosettaCommons Consortium, May 1 2020, In : PLoS computational biology. 16, 5, e1007507.

Research output: Contribution to journalReview article

Open Access

Big Data Analytics and the Struggle for Equity in Health Care: The Promise and Perils

Ibrahim, S. A., Charlson, M. E. & Neill, D. B., Apr 1 2020, In : Health Equity. 4, 1, p. 99-101 3 p.

Research output: Contribution to journalReview article

Open Access

Bounding Flows for Spherical Spin Glass Dynamics

Ben Arous, G., Gheissari, R. & Jagannath, A., Feb 1 2020, In : Communications In Mathematical Physics. 373, 3, p. 1011-1048 38 p.

Research output: Contribution to journalArticle

BugDoc: Algorithms to Debug Computational Processes

Lourenço, R., Freire, J. & Shasha, D., Jun 14 2020, SIGMOD 2020 - Proceedings of the 2020 ACM SIGMOD International Conference on Management of Data. Association for Computing Machinery, p. 463-478 16 p. (Proceedings of the ACM SIGMOD International Conference on Management of Data).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

BugDoc: A System for Debugging Computational Pipelines

Lourenço, R., Freire, J. & Shasha, D., Jun 14 2020, SIGMOD 2020 - Proceedings of the 2020 ACM SIGMOD International Conference on Management of Data. Association for Computing Machinery, p. 2733-2736 4 p. (Proceedings of the ACM SIGMOD International Conference on Management of Data).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

Canard-induced complex oscillations in an excitatory network

Köksal Ersöz, E., Desroches, M., Guillamon, A., Rinzel, J. & Tabak, J., Jun 1 2020, In : Journal Of Mathematical Biology. 80, 7, p. 2075-2107 33 p.

Research output: Contribution to journalArticle

Can far memory improve job throughput?

Amaro, E., Branner-Augmon, C., Luo, Z., Ousterhout, A., Aguilera, M. K., Panda, A., Ratnasamy, S. & Shenker, S., Apr 15 2020, Proceedings of the 15th European Conference on Computer Systems, EuroSys 2020. Association for Computing Machinery, Inc, (Proceedings of the 15th European Conference on Computer Systems, EuroSys 2020).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access

CDK7 Inhibition Potentiates Genome Instability Triggering Anti-tumor Immunity in Small Cell Lung Cancer

Zhang, H., Christensen, C. L., Dries, R., Oser, M. G., Deng, J., Diskin, B., Li, F., Pan, Y., Zhang, X., Yin, Y., Papadopoulos, E., Pyon, V., Thakurdin, C., Kwiatkowski, N., Jani, K., Rabin, A. R., Castro, D. M., Chen, T., Silver, H., Huang, Q. & 29 others, Bulatovic, M., Dowling, C. M., Sundberg, B., Leggett, A., Ranieri, M., Han, H., Li, S., Yang, A., Labbe, K. E., Almonte, C., Sviderskiy, V. O., Quinn, M., Donaghue, J., Wang, E. S., Zhang, T., He, Z., Velcheti, V., Hammerman, P. S., Freeman, G. J., Bonneau, R., Kaelin, W. G., Sutherland, K. D., Kersbergen, A., Aguirre, A. J., Yuan, G. C., Rothenberg, E., Miller, G., Gray, N. S. & Wong, K. K., Jan 13 2020, In : Cancer Cell. 37, 1, p. 37-54.e9

Research output: Contribution to journalArticle

Centering and symmetry breaking in confined contracting actomyosin networks

Ierushalmi, N., Malik-Garbi, M., Manhart, A., Shah, E. A., Goode, B. L., Mogilner, A. & Keren, K., Apr 2020, In : eLife. 9, e55368.

Research output: Contribution to journalArticle

Open Access

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection

Zhang, L., Forst, C. V., Gordon, A., Gussin, G., Geber, A. B., Fernandez, P. J., Ding, T., Lashua, L., Wang, M., Balmaseda, A., Bonneau, R., Zhang, B. & Ghedin, E., Mar 17 2020, In : Microbiome. 8, 1, 39.

Research output: Contribution to journalArticle

Open Access

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

Gabitto, M. I., Rasmussen, A., Wapinski, O., Allaway, K., Carriero, N., Fishell, G. J. & Bonneau, R., Dec 1 2020, In : Nature communications. 11, 1, 747.

Research output: Contribution to journalArticle

Open Access

Classification of the Molecular Defects Associated with Pathogenic Variants of the SLC6A8 Creatine Transporter

Salazar, M. D., Zelt, N. B., Saldivar, R., Kuntz, C. P., Chen, S., Penn, W. D., Bonneau, R., Koehler Leman, J. & Schlebach, J. P., Apr 7 2020, In : Biochemistry. 59, 13, p. 1367-1377 11 p.

Research output: Contribution to journalArticle

Classifier-agnostic saliency map extraction

Zolna, K., Geras, K. J. & Cho, K., Jul 2020, In : Computer Vision and Image Understanding. 196, 102969.

Research output: Contribution to journalArticle

Open Access

Clustering Complex Zeros of Triangular Systems of Polynomials

Imbach, R., Pouget, M. & Yap, C., Jan 1 2020, (Accepted/In press) In : Mathematics in Computer Science.

Research output: Contribution to journalArticle

Compactons and their variational properties for degenerate kdv and nls in dimension 1

Germain, P., Harrop-Griffiths, B. & Marzuola, J. L., Jan 1 2020, In : Quarterly of Applied Mathematics. 78, p. 1-32 32 p., 1538.

Research output: Contribution to journalArticle

Computational limits don't fully explain human cognitive limitations

Davis, E. S. & Marcus, G., Jan 1 2020, In : Behavioral and Brain Sciences. 43, e7.

Research output: Contribution to journalArticle

Conditional density estimation and simulation through optimal transport

Tabak, E. G., Trigila, G. & Zhao, W., Apr 1 2020, In : Machine Learning. 109, 4, p. 665-688 24 p.

Research output: Contribution to journalArticle

Conditional word embedding and hypothesis testing via bayes-by-backprop

Han, R., Spirling, A., Gill, M. & Cho, K., Jan 1 2020, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 4890-4895 6 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Contrast response in a comprehensive network model of macaque V1

Chariker, L., Shapley, R. & Young, L. S., Apr 1 2020, In : Journal of vision. 20, 4, 16.

Research output: Contribution to journalArticle

Open Access
Open Access

Countering language drift via visual grounding

Lee, J., Cho, K. & Kiela, D., Jan 1 2020, EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference. Association for Computational Linguistics, p. 4385-4395 11 p. (EMNLP-IJCNLP 2019 - 2019 Conference on Empirical Methods in Natural Language Processing and 9th International Joint Conference on Natural Language Processing, Proceedings of the Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Crystal Growth Inhibition by Mobile Randomly Distributed Stoppers

Lee-Thorp, J. P., Shtukenberg, A. G. & Kohn, R. V., Mar 4 2020, In : Crystal Growth and Design. 20, 3, p. 1940-1950 11 p.

Research output: Contribution to journalArticle

Crystallization for Coulomb and Riesz interactions as a consequence of the Cohn-Kumar conjecture

Petrache, M. & Serfaty, S., Jul 2020, In : Proceedings of the American Mathematical Society. 148, 7, p. 3047-3057 11 p.

Research output: Contribution to journalArticle

Data-driven physiologic thresholds for iron deficiency associated with hematologic decline

Foy, B. H., Li, A., McClung, J. P., Ranganath, R. & Higgins, J. M., Mar 1 2020, In : American Journal of Hematology. 95, 3, p. 302-309 8 p.

Research output: Contribution to journalArticle

Decoupling strategy and generation in negotiation dialogues

He, H., Chen, D., Balakrishnan, A. & Liang, P., Jan 1 2020, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 2333-2343 11 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep learning models for electrocardiograms are susceptible to adversarial attack

Han, X., Hu, Y., Foschini, L., Chinitz, L., Jankelson, L. & Ranganath, R., Mar 1 2020, In : Nature Medicine. 26, 3, p. 360-363 4 p.

Research output: Contribution to journalLetter

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

Wu, N., Phang, J., Park, J., Shen, Y., Huang, Z., Zorin, M., Jastrzebski, S., Fevry, T., Katsnelson, J., Kim, E., Wolfson, S., Parikh, U., Gaddam, S., Lin, L. L. Y., Ho, K., Weinstein, J. D., Reig, B., Gao, Y., Toth, H., Pysarenko, K. & 12 others, Lewin, A., Lee, J., Airola, K., Mema, E., Chung, S., Hwang, E., Samreen, N., Kim, S. G., Heacock, L., Moy, L., Cho, K. & Geras, K. J., Apr 2020, In : IEEE Transactions on Medical Imaging. 39, 4, p. 1184-1194 11 p., 8861376.

Research output: Contribution to journalArticle

Dehn functions and Hölder extensions in asymptotic cones

Lytchak, A., Wenger, S. & Young, R., Jun 1 2020, In : Journal fur die Reine und Angewandte Mathematik. 2020, 763, p. 79-109 31 p.

Research output: Contribution to journalArticle

Deterministic Guarantees for Burer-Monteiro Factorizations of Smooth Semidefinite Programs

Boumal, N., Voroninski, V. & Bandeira, A. S., Mar 1 2020, In : Communications on Pure and Applied Mathematics. 73, 3, p. 581-608 28 p.

Research output: Contribution to journalArticle

Deterministic non-autoregressive neural sequence modeling by iterative refinement

Lee, J., Mansimov, E. & Cho, K., Jan 1 2020, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 1173-1182 10 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dialogue natural language inference

Welleck, S., Weston, J., Szlam, A. & Cho, K., Jan 1 2020, ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 3731-3741 11 p. (ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Discrepancy-Based Theory and Algorithms for Forecasting Non-Stationary Time Series

Kuznetsov, V. & Mohri, M., Apr 1 2020, In : Annals of Mathematics and Artificial Intelligence. 88, 4, p. 367-399 33 p.

Research output: Contribution to journalArticle

Distributed Algorithms to Find Similar Time Series

Levchenko, O., Kolev, B., Yagoubi, D. E., Shasha, D., Palpanas, T., Valduriez, P., Akbarinia, R. & Masseglia, F., Jan 1 2020, Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2019, Proceedings. Brefeld, U., Fromont, E., Hotho, A., Knobbe, A., Maathuis, M. & Robardet, C. (eds.). Springer, p. 781-785 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11908 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamic meta-embeddings for improved sentence representations

Kiela, D., Wang, C. & Cho, K., Jan 1 2020, Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018. Riloff, E., Chiang, D., Hockenmaier, J. & Tsujii, J. (eds.). Association for Computational Linguistics, p. 1466-1477 12 p. (Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, EMNLP 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution