Courant Institute

Research Output 1953 2020

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2020

A Compact Eulerian Representation of Axisymmetric Inviscid Vortex Sheet Dynamics

Pesci, A. I., Goldstein, R. E. & Shelley, M. J., Feb 1 2020, In : Communications on Pure and Applied Mathematics. 73, 2, p. 239-256 18 p.

Research output: Contribution to journalArticle

Open Access
Vortex Sheet
Vortex flow
Surface Tension
Fluid
Singularity

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access
Gene Regulatory Networks
Dendritic Cells
Interferons
Monocytes
Genes

Exponential Decay for the Near-Critical Scaling Limit of the Planar Ising Model

Camia, F., Jiang, J. & Newman, C. M., Jan 1 2020, (Accepted/In press) In : Communications on Pure and Applied Mathematics.

Research output: Contribution to journalArticle

Open Access
Ising model
Scaling Limit
Exponential Decay
Ising Model
Ensemble
Open Access
Phase Transition
Entropy
Learning
Temperature
Water
2019

A Bayesian approach to calibrating hydrogen flame kinetics using many experiments and parameters

Bell, J., Day, M., Goodman, J., Grout, R. & Morzfeld, M., Jul 1 2019, In : Combustion and Flame. 205, p. 305-315 11 p.

Research output: Contribution to journalArticle

calibrating
Hydrogen
flames
Kinetics
kinetics

A case study in the functional consequences of scaling the sizes of realistic cortical models

Joglekar, M. R., Chariker, L., Shapley, R. & Young, L-S., Jul 1 2019, In : PLoS computational biology. 15, 7, e1007198.

Research output: Contribution to journalArticle

Open Access
Aptitude
Scaling
Visual Cortex
case studies
Neurons
Population Dynamics
Avalanches
Neurons
Neurosciences
In Vitro Techniques

A comparative study of structural similarity and regularization for joint inverse problems governed by PDEs

Crestel, B., Stadler, G. & Ghattas, O., Feb 1 2019, In : Inverse Problems. 35, 2, 024003.

Research output: Contribution to journalArticle

Structural Similarity
Inverse problems
Comparative Study
Regularization
Inverse Problem

A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory

Athanasiadou, R., Neymotin, B., Brandt, N., Wang, W., Christiaen, L., Gresham, D. & Tranchina, D., Mar 1 2019, In : PLoS computational biology. 15, 3, p. e1006794

Research output: Contribution to journalArticle

Open Access
Statistical Models
statistical models
RNA
Spike
Calibration

Active matter invasion of a viscous fluid: Unstable sheets and a no-flow theorem

Miles, C. J., Evans, A. A., Shelley, M. & Spagnolie, S. E., Mar 4 2019, In : Physical Review Letters. 122, 9, 098002.

Research output: Contribution to journalArticle

viscous fluids
theorems
Taylor instability
two dimensional flow
isotropy

Adaptation based on generalized discrepancy

Cortes, C., Mohri, M. & Medina, A. M., Jan 1 2019, In : Journal of Machine Learning Research. 20, p. 1-30 30 p.

Research output: Contribution to journalArticle

Discrepancy
Convex optimization
Training Samples
Convex Optimization
Theoretical Analysis
Feynman-Kac Formula
Stochastic Dynamical Systems
Elasto-plastic
dynamical systems
Dynamical systems
collisional plasmas
aspect ratio
turbulence
fluids
simulation

A high-order wideband direct solver for electromagnetic scattering from bodies of revolution

Epstein, C. L., Greengard, L. & O'Neil, M., Jun 15 2019, In : Journal of Computational Physics. 387, p. 205-229 25 p.

Research output: Contribution to journalArticle

bodies of revolution
Bodies of revolution
electromagnetic scattering
Integral equations
integral equations

Algebraically hyperbolic manifolds have finite automorphism groups

Bogomolov, F., Kamenova, L. & Verbitsky, M., Jan 1 2019, In : Communications in Contemporary Mathematics.

Research output: Contribution to journalArticle

Hyperbolic Manifold
Hyperbolicity
Automorphism Group
Finite Group
Genus
Vesicles
Simulation Analysis
Neurons
Optimization
Neuron

Analysis of (CR) in higher dimension

Buckmaster, T., Germain, P., Hani, Z. & Shatah, J., Jan 1 2019, In : International Mathematics Research Notices. 2019, 4, p. 1265-1280 16 p.

Research output: Contribution to journalArticle

Higher Dimensions
Local Well-posedness
Torus
Nonlinear Equations
Steepest descent method
Nonsmooth Function
Gradient methods
Line Search
Gradient Method

An Augmented Regularized Combined Source Integral Equation for Nonconforming Meshes

Vico, F., Greengard, L., Ferrando-Bataller, M. & Antonino-Daviu, E., Jan 1 2019, (Accepted/In press) In : IEEE Transactions on Antennas and Propagation.

Research output: Contribution to journalArticle

Integral equations
Magnetic fields
Boundary value problems
Stars
Scattering

A neuromechanistic model for rhythmic beat generation

Bose, A., Byrne, Á. & Rinzel, J., May 1 2019, In : PLoS computational biology. 15, 5, p. e1006450

Research output: Contribution to journalArticle

Open Access
Beat
Music
music
Synchronization
Generator

An FFT-accelerated direct solver for electromagnetic scattering from penetrable axisymmetric objects

Lai, J. & O'Neil, M., Aug 1 2019, In : Journal of Computational Physics. 390, p. 152-174 23 p.

Research output: Contribution to journalArticle

Electromagnetic Scattering
electromagnetic scattering
fast Fourier transformations
Fast Fourier transforms
Integral equations

An informal introduction to quantitative stochastic homogenization

Mourrat, J. C., Mar 1 2019, In : Journal of Mathematical Physics. 60, 3, 031506.

Research output: Contribution to journalArticle

Stochastic Homogenization
dials
homogenizing
divergence
operators

An Interdecadal Shift of the Extratropical Teleconnection From the Tropical Pacific During Boreal Summer

O'Reilly, C. H., Woollings, T., Zanna, L. & Weisheimer, A., Nov 28 2019, In : Geophysical Research Letters. 46, 22, p. 13379-13388 10 p.

Research output: Contribution to journalArticle

teleconnection
summer
sea surface temperature
atmospheric circulation
shift

An oculus rift assessment of dynamic balance by head mobility in a virtual park scene: A pilot study

Lubetzky, A., Hujsak, B. D., Fu, G. & Perlin, K., Jan 1 2019, In : Motor Control. 23, 1, p. 127-142 16 p.

Research output: Contribution to journalArticle

Head
Head Movements
Biomechanical Phenomena

An SIQ delay differential equations model for disease control via isolation

Ruschel, S., Pereira, T., Yanchuk, S. & Young, L-S., Jan 1 2019, In : Journal of Mathematical Biology.

Research output: Contribution to journalArticle

Disease control
Curbs
Delay Differential Equations
Health care
health services

Applications of Deep Learning to Ocean Data Inference and Subgrid Parameterization

Bolton, T. & Zanna, L., Jan 2019, In : Journal of Advances in Modeling Earth Systems. 11, 1, p. 376-399 24 p.

Research output: Contribution to journalArticle

Open Access
Parameterization
parameterization
learning
ocean
Neural networks

A Relation Between Disorder Chaos and Incongruent States in Spin Glasses on Z d

Arguin, L. P., Newman, C. & Stein, D. L., May 1 2019, In : Communications in Mathematical Physics. 367, 3, p. 1019-1043 25 p.

Research output: Contribution to journalArticle

Spin Glass
spin glass
chaos
Disorder
Chaos

Assessing external and internal sources of Atlantic multidecadal variability using models, proxy data, and early instrumental indices

O’Reilly, C. H., Zanna, L. & Woollings, T., Nov 1 2019, In : Journal of Climate. 32, 22, p. 7727-7745 19 p.

Research output: Contribution to journalArticle

Open Access
North Atlantic Oscillation
atmospheric circulation
atmospheric forcing
climate
radiative forcing

A transport-based multifidelity preconditioner for Markov chain Monte Carlo

Peherstorfer, B. & Marzouk, Y., Jan 1 2019, In : Advances in Computational Mathematics.

Research output: Contribution to journalArticle

Markov Chain Monte Carlo
Preconditioner
Markov processes
Fidelity
Posterior distribution

Auditory streaming and bistability paradigm extended to a dynamic environment

Byrne, Á., Rinzel, J. & Rankin, J., Nov 2019, In : Hearing Research. 383, 107807.

Research output: Contribution to journalArticle

Open Access
Psychoacoustics
Neurophysiology
Acoustics

A very general quartic double fourfold is not stably rational

Hassett, B., Pirutka, A. & Tschinkel, Y., Jan 1 2019, In : Algebraic Geometry. 6, 1, p. 64-75 12 p.

Research output: Contribution to journalArticle

Threefolds
Quartic
Cover

Bathymetry of Southeast Greenland From Oceans Melting Greenland (OMG) Data

An, L., Rignot, E., Chauche, N., Holland, D. M., Holland, D., Jakobsson, M., Kane, E., Wood, M., Klaucke, I., Morlighem, M., Velicogna, I., Weinrebe, W. & Willis, J. K., Oct 28 2019, In : Geophysical Research Letters. 46, 20, p. 11197-11205 9 p.

Research output: Contribution to journalArticle

Open Access
glaciers
bathymeters
Greenland
bathymetry
oceans

Beyond Walkers in Stochastic Quantum Chemistry: Reducing Error Using Fast Randomized Iteration

Greene, S. M., Webber, R. J., Weare, J. & Berkelbach, T. C., Sep 10 2019, In : Journal of chemical theory and computation. 15, 9, p. 4834-4850 17 p.

Research output: Contribution to journalArticle

Quantum chemistry
quantum chemistry
Ground state
iteration
configuration interaction

Bidirectional sliding of two parallel microtubules generated by multiple identical motors

Allard, J., Doumic, M., Mogilner, A. & Oelz, D., Jan 1 2019, In : Journal of Mathematical Biology.

Research output: Contribution to journalArticle

Microtubules
microtubules
Continuous-time Markov Process
Molecular Motor
Markov Chains

Brownian dynamics of fully confined suspensions of rigid particles without Green's functions

Sprinkle, B., Donev, A., Bhalla, A. P. S. & Patankar, N., Apr 28 2019, In : Journal of Chemical Physics. 150, 16, 164116.

Research output: Contribution to journalArticle

Open Access
Green's function
rigid structures
Suspensions
Green's functions
Substrates

Calculating the Symmetry Number of Flexible Sphere Clusters

Zappa, E. & Holmes-Cerfon, M., Jan 1 2019, In : Journal of Nonlinear Science.

Research output: Contribution to journalArticle

Symmetry
Symmetry Group
Interaction Design
Adjacency
Partition Function

CAVE: Making collective virtual narrative

Layng, K., Perlin, K., Herscher, S., Brenner, C. & Meduri, T., Aug 1 2019, In : Leonardo. 52, 4, p. 349-356 8 p.

Research output: Contribution to journalArticle

Theaters
Virtual reality

Cellogram: On-the-Fly Traction Force Microscopy

Lendenmann, T., Schneider, T., Dumas, J., Tarini, M., Giampietro, C., Bajpai, A., Chen, W., Gerber, J., Poulikakos, D., Ferrari, A. & Panozzo, D., Oct 9 2019, In : Nano Letters. 19, 10, p. 6742-6750 9 p.

Research output: Contribution to journalArticle

traction
Microscopic examination
microscopy
Image processing
Cells

Change surfaces for expressive multidimensional changepoints and counterfactual prediction

Herlands, W., Neill, D. B., Nickisch, H. & Wilson, A. G., Jun 1 2019, In : Journal of Machine Learning Research. 20

Research output: Contribution to journalArticle

Change Point
Prediction
Gaussian Process
Change-point Model
Posterior Mean

Characterization of Transcriptional Regulatory Networks that Promote and Restrict Identities and Functions of Intestinal Innate Lymphoid Cells

Pokrovskii, M., Hall, J. A., Ochayon, D. E., Yi, R., Chaimowitz, N. S., Seelamneni, H., Carriero, N., Watters, A., Waggoner, S. N., Littman, D. R., Bonneau, R. & Miraldi, E. R., Jul 16 2019, In : Immunity. 51, 1, p. 185-197.e6

Research output: Contribution to journalArticle

Gene Regulatory Networks
Homeostasis
Transcription Factors
Genome
Lymphocytes

Coarse graining the dynamics of immersed and driven fiber assemblies

Stein, D. B. & Shelley, M., Jul 9 2019, In : Physical Review Fluids. 4, 7, 073302.

Research output: Contribution to journalArticle

Coarse-graining
Fiber
Fibers
Buckling
Fluids

Comparing chaotic and random dynamical systems

Young, L-S., May 1 2019, In : Journal of Mathematical Physics. 60, 5, 052701.

Research output: Contribution to journalArticle

Open Access
Random Dynamical Systems
Chaotic Dynamical Systems
dynamical systems
Dynamical system
Limit Laws

Comparing mixing times on sparse random graphs

Ben-Hamou, A., Lubetzky, E. & Peres, Y., May 1 2019, In : Annales de l'institut Henri Poincare (B) Probability and Statistics. 55, 2, p. 1116-1130 15 p.

Research output: Contribution to journalArticle

Mixing Time
Simple Random Walk
Sparse Graphs
Random Graphs
Entropy

Complex Energy Landscapes in Spiked-Tensor and Simple Glassy Models: Ruggedness, Arrangements of Local Minima, and Phase Transitions

Ros, V., Ben Arous, G., Biroli, G. & Cammarota, C., Jan 4 2019, In : Physical Review X. 9, 1, 011003.

Research output: Contribution to journalArticle

Open Access
ruggedness
tensors
energy
glass
rice

Computing collision stress in assemblies of active spherocylinders: Applications of a fast and generic geometric method

Yan, W., Zhang, H. & Shelley, M., Feb 14 2019, In : Journal of Chemical Physics. 150, 6, 064109.

Research output: Contribution to journalArticle

assemblies
collisions
Equations of state
emerging
equations of state

Conditional Molecular Design with Deep Generative Models

Kang, S. & Cho, K., Jan 28 2019, In : Journal of Chemical Information and Modeling. 59, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

Molecules
drug
learning
performance
Learning systems

Consequences of delays and imperfect implementation of isolation in epidemic control

Young, L-S., Ruschel, S., Yanchuk, S. & Pereira, T., Dec 1 2019, In : Scientific Reports. 9, 1, 3505.

Research output: Contribution to journalArticle

Open Access
Disease Outbreaks
Reproductive Isolation
Index System
Wireless Networks
Wireless networks
Teaching
Education

Critical Velocity Ionization in Substellar Atmospheres

Wilson, A. D., Dobbs-Dixon, I., Diver, D. A. & Stark, C. R., Dec 1 2019, In : Astrophysical Journal. 887, 2, p. 138

Research output: Contribution to journalArticle

critical velocity
ionization
atmospheres
atmosphere
gas flow

Curvislicer: Slightly curved slicing for 3-axis printers

Etienne, J., Ray, N., Panozzo, D., Hornus, S., Wang, C. C. L., Martínez, J., McMains, S., Alexa, M., Wyvill, B. & Lefebvre, S., Jul 2019, In : ACM Transactions on Graphics. 38, 4, 81.

Research output: Contribution to journalArticle

Printers (computer)
3D printers
Deposits
Sampling
Fabrication