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2020

A Compact Eulerian Representation of Axisymmetric Inviscid Vortex Sheet Dynamics

Pesci, A. I., Goldstein, R. E. & Shelley, M. J., Feb 1 2020, In : Communications on Pure and Applied Mathematics. 73, 2, p. 239-256 18 p.

Research output: Contribution to journalArticle

Open Access

A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV

Johnson, J. S., De Veaux, N., Rives, A. W., Lahaye, X., Lucas, S. Y., Perot, B. P., Luka, M., Garcia-Paredes, V., Amon, L. M., Watters, A., Abdessalem, G., Aderem, A., Manel, N., Littman, D. R., Bonneau, R. & Ménager, M. M., Jan 21 2020, In : Cell Reports. 30, 3, p. 914-931.e9

Research output: Contribution to journalArticle

Open Access

Adaptive Hybridizable Discontinuous Galerkin discretization of the Grad–Shafranov equation by extension from polygonal subdomains

Sánchez-Vizuet, T., Solano, M. E. & Cerfon, A. J., Jan 1 2020, (Accepted/In press) In : Computer Physics Communications. 107239.

Research output: Contribution to journalArticle

A fast boundary integral method for high-order multiscale mesh generation

Vico, F., Greengard, L., O'Neil, M. & Rachh, M., Jan 1 2020, In : SIAM Journal on Scientific Computing. 42, 2, p. A1380-A1401

Research output: Contribution to journalArticle

A fast solver for the narrow capture and narrow escape problems in the sphere

Kaye, J. & Greengard, L., Jan 2020, In : Journal of Computational Physics: X. 5, 100047.

Research output: Contribution to journalArticle

Open Access

A Gaussian Process Related to the Mass Spectrum of the Near-Critical Ising Model

Camia, F., Jiang, J. & Newman, C. M., May 1 2020, In : Journal of Statistical Physics. 179, 4, p. 885-900 16 p.

Research output: Contribution to journalArticle

Algebraically hyperbolic manifolds have finite automorphism groups

Bogomolov, F. A., Kamenova, L. & Verbitsky, M., Mar 1 2020, In : Communications in Contemporary Mathematics. 22, 2, 1950003.

Research output: Contribution to journalArticle

Analysis, Simulation, and Optimization of Stochastic Vesicle Dynamics in Synaptic Transmission

Zhang, C. & Peskin, C. S., Jan 1 2020, In : Communications on Pure and Applied Mathematics. 73, 1, p. 3-62 60 p.

Research output: Contribution to journalArticle

Analysis of the gradient method with an Armijo–Wolfe line search on a class of non-smooth convex functions

Asl, A. & Overton, M. L., Mar 3 2020, In : Optimization Methods and Software. 35, 2, p. 223-242 20 p.

Research output: Contribution to journalArticle

Analyticity up to the boundary for the stokes and the Navier-Stokes systems

Camliyurt, G., Kukavica, I. & Vicol, V., Jan 1 2020, In : Transactions of the American Mathematical Society. 373, 5, p. 3375-3422 48 p.

Research output: Contribution to journalArticle

An automatic method for black margin elimination of Sentinel-1A images over Antarctica

Wang, X. & Holland, D. M., Apr 1 2020, In : Remote Sensing. 12, 7, 1175.

Research output: Contribution to journalArticle

Open Access

A scalable computational platform for particulate Stokes suspensions

Yan, W., Corona, E., Malhotra, D., Veerapaneni, S. & Shelley, M., Sep 1 2020, In : Journal of Computational Physics. 416, 109524.

Research output: Contribution to journalArticle

Asymptotics in percolation on high-girth expanders

Krivelevich, M., Lubetzky, E. & Sudakov, B., Jul 1 2020, In : Random Structures and Algorithms. 56, 4, p. 927-947 21 p.

Research output: Contribution to journalArticle

Bounding Flows for Spherical Spin Glass Dynamics

Ben Arous, G., Gheissari, R. & Jagannath, A., Feb 1 2020, In : Communications In Mathematical Physics. 373, 3, p. 1011-1048 38 p.

Research output: Contribution to journalArticle

Canard-induced complex oscillations in an excitatory network

Köksal Ersöz, E., Desroches, M., Guillamon, A., Rinzel, J. & Tabak, J., Jun 1 2020, In : Journal Of Mathematical Biology. 80, 7, p. 2075-2107 33 p.

Research output: Contribution to journalArticle

CDK7 Inhibition Potentiates Genome Instability Triggering Anti-tumor Immunity in Small Cell Lung Cancer

Zhang, H., Christensen, C. L., Dries, R., Oser, M. G., Deng, J., Diskin, B., Li, F., Pan, Y., Zhang, X., Yin, Y., Papadopoulos, E., Pyon, V., Thakurdin, C., Kwiatkowski, N., Jani, K., Rabin, A. R., Castro, D. M., Chen, T., Silver, H., Huang, Q. & 29 others, Bulatovic, M., Dowling, C. M., Sundberg, B., Leggett, A., Ranieri, M., Han, H., Li, S., Yang, A., Labbe, K. E., Almonte, C., Sviderskiy, V. O., Quinn, M., Donaghue, J., Wang, E. S., Zhang, T., He, Z., Velcheti, V., Hammerman, P. S., Freeman, G. J., Bonneau, R., Kaelin, W. G., Sutherland, K. D., Kersbergen, A., Aguirre, A. J., Yuan, G. C., Rothenberg, E., Miller, G., Gray, N. S. & Wong, K. K., Jan 13 2020, In : Cancer Cell. 37, 1, p. 37-54.e9

Research output: Contribution to journalArticle

Centering and symmetry breaking in confined contracting actomyosin networks

Ierushalmi, N., Malik-Garbi, M., Manhart, A., Shah, E. A., Goode, B. L., Mogilner, A. & Keren, K., Apr 2020, In : eLife. 9, e55368.

Research output: Contribution to journalArticle

Open Access

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection

Zhang, L., Forst, C. V., Gordon, A., Gussin, G., Geber, A. B., Fernandez, P. J., Ding, T., Lashua, L., Wang, M., Balmaseda, A., Bonneau, R., Zhang, B. & Ghedin, E., Mar 17 2020, In : Microbiome. 8, 1, 39.

Research output: Contribution to journalArticle

Open Access

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

Gabitto, M. I., Rasmussen, A., Wapinski, O., Allaway, K., Carriero, N., Fishell, G. J. & Bonneau, R., Dec 1 2020, In : Nature communications. 11, 1, 747.

Research output: Contribution to journalArticle

Open Access

Classification of the Molecular Defects Associated with Pathogenic Variants of the SLC6A8 Creatine Transporter

Salazar, M. D., Zelt, N. B., Saldivar, R., Kuntz, C. P., Chen, S., Penn, W. D., Bonneau, R., Koehler Leman, J. & Schlebach, J. P., Apr 7 2020, In : Biochemistry. 59, 13, p. 1367-1377 11 p.

Research output: Contribution to journalArticle

Classifier-agnostic saliency map extraction

Zolna, K., Geras, K. J. & Cho, K., Jul 2020, In : Computer Vision and Image Understanding. 196, 102969.

Research output: Contribution to journalArticle

Open Access

Clustering Complex Zeros of Triangular Systems of Polynomials

Imbach, R., Pouget, M. & Yap, C., Jan 1 2020, (Accepted/In press) In : Mathematics in Computer Science.

Research output: Contribution to journalArticle

Compactons and their variational properties for degenerate kdv and nls in dimension 1

Germain, P., Harrop-Griffiths, B. & Marzuola, J. L., Jan 1 2020, In : Quarterly of Applied Mathematics. 78, p. 1-32 32 p., 1538.

Research output: Contribution to journalArticle

Computational limits don't fully explain human cognitive limitations

Davis, E. S. & Marcus, G., Jan 1 2020, In : Behavioral and Brain Sciences. 43, e7.

Research output: Contribution to journalArticle

Conditional density estimation and simulation through optimal transport

Tabak, E. G., Trigila, G. & Zhao, W., Apr 1 2020, In : Machine Learning. 109, 4, p. 665-688 24 p.

Research output: Contribution to journalArticle

Contrast response in a comprehensive network model of macaque V1

Chariker, L., Shapley, R. & Young, L. S., Apr 1 2020, In : Journal of vision. 20, 4, 16.

Research output: Contribution to journalArticle

Open Access

Crystal Growth Inhibition by Mobile Randomly Distributed Stoppers

Lee-Thorp, J. P., Shtukenberg, A. G. & Kohn, R. V., Mar 4 2020, In : Crystal Growth and Design. 20, 3, p. 1940-1950 11 p.

Research output: Contribution to journalArticle

Crystallization for Coulomb and Riesz interactions as a consequence of the Cohn-Kumar conjecture

Petrache, M. & Serfaty, S., Jul 2020, In : Proceedings of the American Mathematical Society. 148, 7, p. 3047-3057 11 p.

Research output: Contribution to journalArticle

Data-driven physiologic thresholds for iron deficiency associated with hematologic decline

Foy, B. H., Li, A., McClung, J. P., Ranganath, R. & Higgins, J. M., Mar 1 2020, In : American Journal of Hematology. 95, 3, p. 302-309 8 p.

Research output: Contribution to journalArticle

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

Wu, N., Phang, J., Park, J., Shen, Y., Huang, Z., Zorin, M., Jastrzebski, S., Fevry, T., Katsnelson, J., Kim, E., Wolfson, S., Parikh, U., Gaddam, S., Lin, L. L. Y., Ho, K., Weinstein, J. D., Reig, B., Gao, Y., Toth, H., Pysarenko, K. & 12 others, Lewin, A., Lee, J., Airola, K., Mema, E., Chung, S., Hwang, E., Samreen, N., Kim, S. G., Heacock, L., Moy, L., Cho, K. & Geras, K. J., Apr 2020, In : IEEE Transactions on Medical Imaging. 39, 4, p. 1184-1194 11 p., 8861376.

Research output: Contribution to journalArticle

Dehn functions and Hölder extensions in asymptotic cones

Lytchak, A., Wenger, S. & Young, R., Jun 1 2020, In : Journal fur die Reine und Angewandte Mathematik. 2020, 763, p. 79-109 31 p.

Research output: Contribution to journalArticle

Deterministic Guarantees for Burer-Monteiro Factorizations of Smooth Semidefinite Programs

Boumal, N., Voroninski, V. & Bandeira, A. S., Mar 1 2020, In : Communications on Pure and Applied Mathematics. 73, 3, p. 581-608 28 p.

Research output: Contribution to journalArticle

Discrepancy-Based Theory and Algorithms for Forecasting Non-Stationary Time Series

Kuznetsov, V. & Mohri, M., Apr 1 2020, In : Annals of Mathematics and Artificial Intelligence. 88, 4, p. 367-399 33 p.

Research output: Contribution to journalArticle

Efficient high-order singular quadrature schemes in magnetic fusion

Malhotra, D., Cerfon, A. J., O'Neil, M. & Toler, E., Jan 1 2020, In : Plasma Physics and Controlled Fusion. 62, 2, 024004.

Research output: Contribution to journalArticle

Elimination of MHD current sheets by modifications to the plasma wall in a fixed boundary model

Kim, E., McFadden, G. B. & Cerfon, A. J., Jan 1 2020, In : Plasma Physics and Controlled Fusion. 62, 4, 044002.

Research output: Contribution to journalArticle

Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms

and the DM DREAM Consortium, Mar 2 2020, In : JAMA network open. 3, 3, p. e200265

Research output: Contribution to journalArticle

Open Access

Existence Results for Minimizers of Parametric Elliptic Functionals

De Philippis, G., De Rosa, A. & Ghiraldin, F., Apr 1 2020, In : Journal of Geometric Analysis. 30, 2, p. 1450-1465 16 p.

Research output: Contribution to journalArticle

Exponential Decay for the Near-Critical Scaling Limit of the Planar Ising Model

Camia, F., Jiang, J. & Newman, C. M., Jan 1 2020, (Accepted/In press) In : Communications on Pure and Applied Mathematics. 73, 7, p. 1371-1405 35 p.

Research output: Contribution to journalArticle

Open Access

Exponentially slow mixing in the mean-field Swendsen-Wang dynamics

Gheissari, R., Lubetzky, E. & Peres, Y., Jan 1 2020, In : Annales de l'institut Henri Poincare (B) Probability and Statistics. 56, 1, p. 68-86 19 p.

Research output: Contribution to journalArticle

Extended-range statistical ENSO prediction through operator-theoretic techniques for nonlinear dynamics

Wang, X., Slawinska, J. & Giannakis, D., Dec 1 2020, In : Scientific reports. 10, 1, 2636.

Research output: Contribution to journalArticle

Open Access

Factorization of the translation kernel for fast rigid image alignment

Rangan, A., Spivak, M., Andén, J. & Barnett, A., Jan 1 2020, In : Inverse Problems. 36, 2, 024001.

Research output: Contribution to journalArticle

Fast and Accurate Computation of Vertical Modes

Early, J. J., Lelong, M. P. & Smith, K. S., Feb 1 2020, In : Journal of Advances in Modeling Earth Systems. 12, 2, e2019MS001939.

Research output: Contribution to journalArticle

Open Access

Fast radix-32 approximate dfts for 1024-beam digital rf beamforming

Madanayake, A., Cintra, R. J., Akram, N., Ariyarathna, V., Mandal, S., Coutinho, V. A., Bayer, F. M., Coelho, D. & Rappaport, T. S., Jan 1 2020, In : IEEE Access. 8, p. 96613-96627 15 p., 9093889.

Research output: Contribution to journalArticle

Open Access

First-order perturbation theory for eigenvalues and eigenvectors

Greenbaum, A., Li, R. C. & Overton, M. L., Jan 1 2020, In : SIAM Review. 62, 2, p. 463-482 20 p.

Research output: Contribution to journalArticle

Open Access

FK–Ising coupling applied to near-critical planar models

Camia, F., Jiang, J. & Newman, C. M., Feb 2020, In : Stochastic Processes and their Applications. 130, 2, p. 560-583 24 p.

Research output: Contribution to journalArticle

Flux-balanced two-field plasma edge turbulence in a channel geometry

Qi, D. & Majda, A. J., Mar 1 2020, In : Physics of Plasmas. 27, 3, 032304.

Research output: Contribution to journalArticle

Open Access

Gene regulatory network reconstruction using single-cell rna sequencing of barcoded genotypes in diverse environments

Jackson, C. A., Castro, D. M., Saldi, G. A., Bonneau, R. & Gresham, D., Jan 2020, In : eLife. 9, e51254.

Research output: Contribution to journalArticle

Open Access