Courant Institute

Research Output

Filter
Review article
2020

Better together: Elements of successful scientific software development in a distributed collaborative community

RosettaCommons Consortium, May 1 2020, In : PLoS computational biology. 16, 5, e1007507.

Research output: Contribution to journalReview article

Open Access

Big Data Analytics and the Struggle for Equity in Health Care: The Promise and Perils

Ibrahim, S. A., Charlson, M. E. & Neill, D. B., Apr 1 2020, In : Health Equity. 4, 1, p. 99-101 3 p.

Research output: Contribution to journalReview article

Open Access

Experiment, theory, and the keratocyte: An ode to a simple model for cell motility

Mogilner, A., Barnhart, E. L. & Keren, K., Apr 2020, In : Seminars in Cell and Developmental Biology. 100, p. 143-151 9 p.

Research output: Contribution to journalReview article

Macromolecular modeling and design in Rosetta: recent methods and frameworks

Leman, J. K., Weitzner, B. D., Lewis, S. M., Adolf-Bryfogle, J., Alam, N., Alford, R. F., Aprahamian, M., Baker, D., Barlow, K. A., Barth, P., Basanta, B., Bender, B. J., Blacklock, K., Bonet, J., Boyken, S. E., Bradley, P., Bystroff, C., Conway, P., Cooper, S., Correia, B. E. & 88 others, Coventry, B., Das, R., De Jong, R. M., DiMaio, F., Dsilva, L., Dunbrack, R., Ford, A. S., Frenz, B., Fu, D. Y., Geniesse, C., Goldschmidt, L., Gowthaman, R., Gray, J. J., Gront, D., Guffy, S., Horowitz, S., Huang, P. S., Huber, T., Jacobs, T. M., Jeliazkov, J. R., Johnson, D. K., Kappel, K., Karanicolas, J., Khakzad, H., Khar, K. R., Khare, S. D., Khatib, F., Khramushin, A., King, I. C., Kleffner, R., Koepnick, B., Kortemme, T., Kuenze, G., Kuhlman, B., Kuroda, D., Labonte, J. W., Lai, J. K., Lapidoth, G., Leaver-Fay, A., Lindert, S., Linsky, T., London, N., Lubin, J. H., Lyskov, S., Maguire, J., Malmström, L., Marcos, E., Marcu, O., Marze, N. A., Meiler, J., Moretti, R., Mulligan, V. K., Nerli, S., Norn, C., Ó’Conchúir, S., Ollikainen, N., Ovchinnikov, S., Pacella, M. S., Pan, X., Park, H., Pavlovicz, R. E., Pethe, M., Pierce, B. G., Pilla, K. B., Raveh, B., Renfrew, P. D., Burman, S. S. R., Rubenstein, A., Sauer, M. F., Scheck, A., Schief, W., Schueler-Furman, O., Sedan, Y., Sevy, A. M., Sgourakis, N. G., Shi, L., Siegel, J. B., Silva, D. A., Smith, S., Song, Y., Stein, A., Szegedy, M., Teets, F. D., Thyme, S. B., Wang, R. Y. R., Watkins, A., Zimmerman, L. & Bonneau, R., Jul 1 2020, In : Nature methods. 17, 7, p. 665-680 16 p.

Research output: Contribution to journalReview article

The Southern Ocean and its interaction with the Antarctic Ice Sheet

Holland, D. M., Nicholls, K. W. & Basinski, A., Mar 20 2020, In : Science. 367, 6484, p. 1326-1330 5 p.

Research output: Contribution to journalReview article

2019

A new mixed potential representation for unsteady, incompressible flow

Greengard, L. & Jiang, S., Jan 1 2019, In : SIAM Review. 61, 4, p. 733-755 23 p.

Research output: Contribution to journalReview article

Classical and emerging regulatory mechanisms of cytokinesis in animal cells

Verma, V., Mogilner, A. & Maresca, T. J., Sep 2019, In : Biology. 8, 3, 55.

Research output: Contribution to journalReview article

Open Access

Climate Model Uncertainty and Trend Detection in Regional Sea Level Projections: A Review

Carson, M., Lyu, K., Richter, K., Becker, M., Domingues, C. M., Han, W. & Zanna, L., Nov 1 2019, In : Surveys in Geophysics. 40, 6, p. 1631-1653 23 p.

Research output: Contribution to journalReview article

Computational models of auditory perception from feature extraction to stream segregation and behavior

Rankin, J. & Rinzel, J., Oct 2019, In : Current Opinion in Neurobiology. 58, p. 46-53 8 p.

Research output: Contribution to journalReview article

Open Access

Current approaches for the analysis of spindle organization

Redemann, S., Fürthauer, S., Shelley, M. & Müller-Reichert, T., Oct 2019, In : Current Opinion in Structural Biology. 58, p. 269-277 9 p.

Research output: Contribution to journalReview article

Deception, identity, and security: The game theory of sybil attacks

Casey, W., Kellner, A., Memarmoshrefi, P., Morales, J. A. & Mishra, B., Jan 2019, In : Communications of the ACM. 62, 1, p. 85-93 9 p.

Research output: Contribution to journalReview article

Dynamics of flexible fibers in viscous flows and fluids

Du Roure, O., Lindner, A., Nazockdast, E. N. & Shelley, M. J., Jan 5 2019, In : Annual Review of Fluid Mechanics. 51, p. 539-572 34 p.

Research output: Contribution to journalReview article

European Space Agency experiments on thermodiffusion of fluid mixtures in space

Braibanti, M., Artola, P. A., Baaske, P., Bataller, H., Bazile, J. P., Bou-Ali, M. M., Cannell, D. S., Carpineti, M., Cerbino, R., Croccolo, F., Diaz, J., Donev, A., Errarte, A., Ezquerro, J. M., Frutos-Pastor, A., Galand, Q., Galliero, G., Gaponenko, Y., García-Fernández, L., Gavaldá, J. & 35 others, Giavazzi, F., Giglio, M., Giraudet, C., Hoang, H., Kufner, E., Köhler, W., Lapeira, E., Laverón-Simavilla, A., Legros, J. C., Lizarraga, I., Lyubimova, T., Mazzoni, S., Melville, N., Mialdun, A., Minster, O., Montel, F., Molster, F. J., Ortiz de Zárate, J. M., Rodríguez, J., Rousseau, B., Ruiz, X., Ryzhkov, I. I., Schraml, M., Shevtsova, V., Takacs, C. J., Triller, T., Van Vaerenbergh, S., Vailati, A., Verga, A., Vermorel, R., Vesovic, V., Yasnou, V., Xu, S., Zapf, D. & Zhang, K., Jul 1 2019, In : European Physical Journal E. 42, 7, 86.

Research output: Contribution to journalReview article

Fluctuating Hydrodynamics and Debye-Hückel-Onsager Theory for Electrolytes

Donev, A., Garcia, A. L., Péraud, J. P., Nonaka, A. J. & Bell, J. B., Feb 2019, In : Current Opinion in Electrochemistry. 13, p. 1-10 10 p.

Research output: Contribution to journalReview article

From cytoskeletal assemblies to living materials

Foster, P. J., Fürthauer, S., Shelley, M. J. & Needleman, D. J., Feb 2019, In : Current Opinion in Cell Biology. 56, p. 109-114 6 p.

Research output: Contribution to journalReview article

Keeping Score: Predictive Analytics in Policing

Fitzpatrick, D. J., Gorr, W. L. & Neill, D. B., Jan 13 2019, In : Annual Review of Criminology. 2, p. 473-491 19 p.

Research output: Contribution to journalReview article

Model Hierarchies for Understanding Atmospheric Circulation

Maher, P., Gerber, E. P., Medeiros, B., Merlis, T. M., Sherwood, S., Sheshadri, A., Sobel, A. H., Vallis, G. K., Voigt, A. & Zurita-Gotor, P., Jun 2019, In : Reviews of Geophysics. 57, 2, p. 250-280 31 p.

Research output: Contribution to journalReview article

Towards comprehensive observing and modeling systems for monitoring and predicting regional to coastal sea level

Ponte, R. M., Carson, M., Cirano, M., Domingues, C. M., Jevrejeva, S., Marcos, M., Mitchum, G., van de Wal, R. S. W., Woodworth, P. L., Ablain, M., Ardhuin, F., Ballu, V., Becker, M., Benveniste, J., Birol, F., Bradshaw, E., Cazenave, A., De Mey-Frémaux, P., Durand, F., Ezer, T. & 33 others, Fu, L. L., Fukumori, I., Gordon, K., Gravelle, M., Griffies, S. M., Han, W., Hibbert, A., Hughes, C. W., Idier, D., Kourafalou, V. H., Little, C. M., Matthews, A., Melet, A., Merrifield, M., Meyssignac, B., Minobe, S., Penduff, T., Picot, N., Piecuch, C., Ray, R. D., Rickards, L., Santamaría-Gómez, A., Stammer, D., Staneva, J., Testut, L., Thompson, K., Thompson, P., Vignudelli, S., Williams, J., Simon, S. D., Wöppelmann, G., Zanna, L. & Zhang, X., Jan 1 2019, In : Frontiers in Marine Science. 6, JUL, 437.

Research output: Contribution to journalReview article

Open Access

Transversal fluctuations for a first passage percolation model

Bakhtin, Y. & Wu, W., May 2019, In : Annales de l'institut Henri Poincare (B) Probability and Statistics. 55, 2, p. 1042-1060 19 p.

Research output: Contribution to journalReview article

Twenty-five years of information extraction

Grishman, R., Nov 1 2019, In : Natural Language Engineering. 25, 6, p. 677-692 16 p.

Research output: Contribution to journalReview article

Understanding the Seasonal Cycle of Antarctic Sea Ice Extent in the Context of Longer-Term Variability

Eayrs, C., Holland, D., Francis, D., Wagner, T., Kumar, R. & Li, X., Sep 1 2019, In : Reviews of Geophysics. 57, 3, p. 1037-1064 28 p.

Research output: Contribution to journalReview article

2018

A probabilistic approach to discovering dynamic full-brain functional connectivity patterns

Manning, J. R., Zhu, X., Willke, T. L., Ranganath, R., Stachenfeld, K., Hasson, U., Blei, D. M. & Norman, K. A., Oct 15 2018, In : NeuroImage. 180, p. 243-252 10 p.

Research output: Contribution to journalReview article

Control Mechanisms of Static and Dynamic Balance in Adults With and Without Vestibular Dysfunction in Oculus Virtual Environments

Lubetzky, A. V., Hujsak, B. D., Kelly, J. L., Fu, G. & Perlin, K., Nov 2018, In : PM and R. 10, 11, p. 1223-1236.e2

Research output: Contribution to journalReview article

Intracellular Fluid Mechanics: Coupling Cytoplasmic Flow with Active Cytoskeletal Gel

Mogilner, A. & Manhart, A., Jan 5 2018, In : Annual Review of Fluid Mechanics. 50, p. 347-370 24 p.

Research output: Contribution to journalReview article

Koopman analysis of the long-term evolution in a turbulent convection cell

Giannakis, D., Kolchinskaya, A., Krasnov, D. & Schumacher, J., Jul 25 2018, In : Journal of Fluid Mechanics. 847, p. 735-767 33 p.

Research output: Contribution to journalReview article

Lagrangian ocean analysis: Fundamentals and practices

van Sebille, E., Griffies, S. M., Abernathey, R., Adams, T. P., Berloff, P., Biastoch, A., Blanke, B., Chassignet, E. P., Cheng, Y., Cotter, C. J., Deleersnijder, E., Döös, K., Drake, H. F., Drijfhout, S., Gary, S. F., Heemink, A. W., Kjellsson, J., Koszalka, I. M., Lange, M., Lique, C. & 15 others, MacGilchrist, G. A., Marsh, R., Mayorga Adame, C. G., McAdam, R., Nencioli, F., Paris, C. B., Piggott, M. D., Polton, J. A., Rühs, S., Shah, S. H. A. M., Thomas, M. D., Wang, J., Wolfram, P. J., Zanna, L. & Zika, J. D., Jan 2018, In : Ocean Modelling. 121, p. 49-75 27 p.

Research output: Contribution to journalReview article

Open Access

Stellarator Research Opportunities: A Report of the National Stellarator Coordinating Committee

Gates, D. A., Anderson, D., Anderson, S., Zarnstorff, M., Spong, D. A., Weitzner, H., Neilson, G. H., Ruzic, D., Andruczyk, D., Harris, J. H., Mynick, H., Hegna, C. C., Schmitz, O., Talmadge, J. N., Curreli, D., Maurer, D., Boozer, A. H., Knowlton, S., Allain, J. P., Ennis, D. & 29 others, Wurden, G., Reiman, A., Lore, J. D., Landreman, M., Freidberg, J. P., Hudson, S. R., Porkolab, M., Demers, D., Terry, J., Edlund, E., Lazerson, S. A., Pablant, N., Fonck, R., Volpe, F., Canik, J., Granetz, R., Ware, A., Hanson, J. D., Kumar, S., Deng, C., Likin, K., Cerfon, A., Ram, A., Hassam, A., Prager, S., Paz-Soldan, C., Pueschel, M. J., Joseph, I. & Glasser, A. H., Feb 1 2018, In : Journal of Fusion Energy. 37, 1, p. 51-94 44 p.

Research output: Contribution to journalReview article

Survey of multifidelity methods in uncertainty propagation, inference, and optimization

Peherstorfer, B., Willcox, K. & Gunzburger, M., Jan 1 2018, In : SIAM Review. 60, 3, p. 550-591 42 p.

Research output: Contribution to journalReview article

The role of submesoscale currents in structuring marine ecosystems

Lévy, M., Franks, P. J. S. & Smith, K. S., Dec 1 2018, In : Nature communications. 9, 1, 4758.

Research output: Contribution to journalReview article

Open Access

Why are there hotspot mutations in the TP53 gene in human cancers?

Baugh, E. H., Ke, H., Levine, A. J., Bonneau, R. A. & Chan, C. S., Jan 1 2018, In : Cell Death and Differentiation. 25, 1, p. 154-160 7 p.

Research output: Contribution to journalReview article

2017

Acquisition of a 3 min, two-dimensional glacier velocity field with terrestrial radar interferometry

Voytenko, D., Dixon, T. H., Holland, D. M., Cassotto, R., Howat, I. M., Fahnestock, M. A., Truffer, M. & De La Peña, S., Aug 1 2017, In : Journal of Glaciology. 63, 240, p. 629-636 8 p.

Research output: Contribution to journalReview article

Biophysically motivated regulatory network inference: Progress and prospects

Äijö, T. & Bonneau, R., Jan 1 2017, In : Human Heredity. 81, 2, p. 62-77 16 p.

Research output: Contribution to journalReview article

Fast randomized iteration: Diffusion Monte Carlo through the lens of numerical linear algebra

Lim, L. H. & Weare, J., Jan 1 2017, In : SIAM Review. 59, 3, p. 547-587 41 p.

Research output: Contribution to journalReview article

Geometric Deep Learning: Going beyond Euclidean data

Bronstein, M. M., Bruna, J., Lecun, Y., Szlam, A. & Vandergheynst, P., Jul 2017, In : IEEE Signal Processing Magazine. 34, 4, p. 18-42 25 p., 7974879.

Research output: Contribution to journalReview article

How much, how fast? A science review and outlook for research on the instability of Antarctica's Thwaites Glacier in the 21st century

Scambos, T. A., Bell, R. E., Alley, R. B., Anandakrishnan, S., Bromwich, D. H., Brunt, K., Christianson, K., Creyts, T., Das, S. B., DeConto, R., Dutrieux, P., Fricker, H. A., Holland, D., MacGregor, J., Medley, B., Nicolas, J. P., Pollard, D., Siegfried, M. R., Smith, A. M., Steig, E. J. & 3 others, Trusel, L. D., Vaughan, D. G. & Yager, P. L., Jun 1 2017, In : Global and Planetary Change. 153, p. 16-34 19 p.

Research output: Contribution to journalReview article

Logical formalizations of commonsense reasoning: A survey

Davis, E., May 2017, In : Journal of Artificial Intelligence Research. 59, p. 651-723 73 p.

Research output: Contribution to journalReview article

Open Access

Lousy advice to the lovelorn

Davis, E., Dec 2017, In : Communications of the ACM. 60, 12, p. 33-35 3 p.

Research output: Contribution to journalReview article

Overview of Millimeter Wave Communications for Fifth-Generation (5G) Wireless Networks-With a Focus on Propagation Models

Rappaport, T. S., Xing, Y., MacCartney, G. R., Molisch, A. F., Mellios, E. & Zhang, J., Dec 2017, In : IEEE Transactions on Antennas and Propagation. 65, 12, p. 6213-6230 18 p., 7999294.

Research output: Contribution to journalReview article

Sleep regulation of the distribution of cortical firing rates

Levenstein, D., Watson, B. O., Rinzel, J. & Buzsáki, G., Jun 1 2017, In : Current Opinion in Neurobiology. 44, p. 34-42 9 p.

Research output: Contribution to journalReview article

Sticky-sphere clusters

Holmes-Cerfon, M., Mar 31 2017, In : Annual Review of Condensed Matter Physics. 8, p. 77-98 22 p.

Research output: Contribution to journalReview article

2016

Agent-based modeling: Case study in cleavage furrow models

Mogilner, A. & Manhart, A., Nov 7 2016, In : Molecular biology of the cell. 27, 22, p. 3379-3384 6 p.

Research output: Contribution to journalReview article

Enumerating rigid sphere packings

Holmes-Cerfon, M. C., Jan 1 2016, In : SIAM Review. 58, 2, p. 229-244 16 p.

Research output: Contribution to journalReview article

The scope and limits of simulation in automated reasoning

Davis, E. & Marcus, G., Apr 2016, In : Artificial Intelligence. 233, p. 60-72 13 p.

Research output: Contribution to journalReview article

2015

Colourful categories

Gromov, M. L., Jan 1 2015, In : Russian Mathematical Surveys. 70, 4, p. 591-655 65 p.

Research output: Contribution to journalReview article

Commonsense reasoning and commonsense knowledge in artificial intelligence

Davis, E. & Marcus, G., Sep 1 2015, In : Communications of the ACM. 58, 9, p. 92-103 12 p.

Research output: Contribution to journalReview article

Complex singularities and PDEs

Caflisch, R. E., Gargano, F., Sammartino, M. & Sciacca, V., Jan 1 2015, In : Rivista di Matematica della Universita di Parma. 6, 1, p. 69-133 65 p.

Research output: Contribution to journalReview article

Deep learning

Lecun, Y., Bengio, Y. & Hinton, G., May 27 2015, In : Nature. 521, 7553, p. 436-444 9 p.

Research output: Contribution to journalReview article

Demystifying Quadrilateral Remeshing

Panozzo, D., Mar 1 2015, In : IEEE Computer Graphics and Applications. 35, 2, p. 88-95 8 p., 7064658.

Research output: Contribution to journalReview article

Quantum XOR games

Regev, O. & Vidick, T., Aug 1 2015, In : ACM Transactions on Computation Theory. 7, 4, 15.

Research output: Contribution to journalReview article

The global engine that could: How do hydrological processes affect Earth's heat engine?

Pauluis, O. M., Jan 30 2015, In : Science. 347, 6221, p. 475-476 2 p.

Research output: Contribution to journalReview article