Faculty of Arts and Science

Research Output 1960 2019

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Article
2019

A comparison of the prevalence of psychiatric disorders in Puerto Rico with the United States and the Puerto Rican population of the United States

Canino, G., Shrout, P., NeMoyer, A., Vila, D., Santiago, K. M., Garcia, P., Quiñones, A., Cruz, V. & Alegria, M., Jan 1 2019, (Accepted/In press) In : Social psychiatry and psychiatric epidemiology.

Research output: Contribution to journalArticle

Puerto Rico
Psychiatry
social support
Hispanic Americans
Social Support

A diverse range of factors affect the nature of neural representations underlying short-term memory

Orhan, A. E. & Ma, W. J., Feb 1 2019, In : Nature Neuroscience. 22, 2, p. 275-283 9 p.

Research output: Contribution to journalArticle

Short-Term Memory
Population
Neurons
Brain

A matter of timing

Perry, M. W. & Desplan, C., Jan 1 2019, In : eLife. 8

Research output: Contribution to journalArticle

Brief, daily meditation enhances attention, memory, mood, and emotional regulation in non-experienced meditators

Basso, J. C., McHale, A., Ende, V., Oberlin, D. J. & Suzuki, W., Jan 1 2019, In : Behavioural Brain Research. 356, p. 208-220 13 p.

Research output: Contribution to journalArticle

Meditation
Webcasts
Exercise Test
Control Groups
Short-Term Memory

Bringing close others to the emergency department for an acute coronary event is associated with increased patient perception of threat

Cornelius, T., Meli, L., Thorson, K. R., Chang, B. P., Edmondson, D. & West, T., Jan 1 2019, In : General Hospital Psychiatry. 56, p. 42-49 8 p.

Research output: Contribution to journalArticle

Acute Coronary Syndrome
Post-Traumatic Stress Disorders
Hospital Emergency Service
Medication Adherence
Checklist

Developmental evidence for a link between the inherence bias in explanation and psychological essentialism

Sutherland, S. L. & Cimpian, A., Jan 1 2019, In : Journal of experimental child psychology. 177, p. 265-281 17 p.

Research output: Contribution to journalArticle

Psychology

Diastereoselectivities in Reductions of α-Alkoxy Ketones Are Not Always Correlated to Chelation-Induced Rate Acceleration

Bartolo, N. D., Hornstein, A. L., Zhao, A. Y. & Woerpel, K., Jan 1 2019, In : Synthesis (Germany). 51, 1, p. 296-302 7 p.

Research output: Contribution to journalArticle

Chelation
Ketones
Reducing Agents
Reducing agents
Organometallics

Did I do that? Detecting a perturbation to visual feedback in a reaching task

Gaffin-Cahn, E., Hudson, T. E. & Landy, M., Jan 1 2019, In : Journal of vision. 19, 1, p. 1-18 18 p., 5.

Research output: Contribution to journalArticle

Sensory Feedback
Proprioception
Aptitude

Directing voluntary temporal attention increases fixational stability

Denison, R. N., Yuval-Greenberg, S. & Carrasco-Queijeiro, M., Jan 9 2019, In : Journal of Neuroscience. 39, 2, p. 353-363 11 p.

Research output: Contribution to journalArticle

Eye Movements
Visual Perception
Task Performance and Analysis
Inhibition (Psychology)

Distance-dependent memory for pictures and words

Amit, E., Rim, S. Y., Halbeisen, G., Cohen Priva, U., Stephan, E. & Trope, Y., Apr 1 2019, In : Journal of Memory and Language. 105, p. 119-130 12 p.

Research output: Contribution to journalArticle

Data storage equipment
Psychology
Labels
experiment
Episodic Memory

Dorsal hippocampal damage disrupts the auditory context-dependent attenuation of taste neophobia in mice

Grau-Perales, A. B., Levy, E. R. J., Fenton, A. & Gallo, M., Jan 1 2019, In : Neurobiology of Learning and Memory. 157, p. 121-127 7 p.

Research output: Contribution to journalArticle

Hippocampus
N-Methylaspartate
Rodentia
Learning
Brain

Engagement of Pulvino-cortical Feedforward and Feedback Pathways in Cognitive Computations

Jaramillo, J., Mejias, J. F. & Wang, X-J., Jan 16 2019, In : Neuron. 101, 2, p. 321-336.e9

Research output: Contribution to journalArticle

Pulvinar
Cognition
Thalamic Nuclei
Macaca
Thalamus

Explanation as a Cognitive Process

Horne, Z., Muradoglu, M. & Cimpian, A., Jan 1 2019, (Accepted/In press) In : Trends in cognitive sciences.

Research output: Contribution to journalArticle

Research
Cognitive Science
Long-Term Memory

Generation of 8-oxo-7,8-dihydroguanine in G-Quadruplexes Models of Human Telomere Sequences by One-electron Oxidation

Merta, T. J., Geacintov, N. & Shafirovich, V., Jan 1 2019, In : Photochemistry and photobiology. 95, 1, p. 244-251 8 p.

Research output: Contribution to journalArticle

telomeres
G-Quadruplexes
Telomere
Electrons
Ions

Hippocampal gamma predicts associative memory performance as measured by acute and chronic intracranial EEG

Henin, S., Shankar, A., Hasulak, N., Friedman, D., Dugan, P., Melloni, L., Flinker, A., Sarac, C., Fang, M., Doyle, W., Tcheng, T., Devinsky, O., Davachi, L. & Liu, A., Dec 1 2019, In : Scientific reports. 9, 1, 593.

Research output: Contribution to journalArticle

Electroencephalography
Research
Epilepsy
Seizures
Research Personnel

How the Internally Organized Direction Sense Is Used to Navigate

Park, E. H., Keeley, S., Savin, C., Ranck, J. B. & Fenton, A., Jan 16 2019, In : Neuron. 101, 2, p. 285-293.e5

Research output: Contribution to journalArticle

Entorhinal Cortex
Direction compound

Inferring bacterial recombination rates from large-scale sequencing datasets

Lin, M. & Kussell, E., Feb 1 2019, In : Nature Methods. 16, 2, p. 199-204 6 p.

Research output: Contribution to journalArticle

Genetic Recombination
Gene Pool
Genes
Metagenomics
Bacterial DNA

Initial characterization of Wnt-Tcf functions during Ciona heart development

Kaplan, N. A., Wang, W. & Christiaen, L., Jan 1 2019, (Accepted/In press) In : Developmental Biology.

Research output: Contribution to journalArticle

Wnt Signaling Pathway
Pharyngeal Muscles
Muscle Development
Cardiac Myocytes
Vertebrates

Is the most representative skunk the average or the stinkiest? developmental changes in representations of biological categories

Foster-Hanson, E. & Rhodes, M., May 1 2019, In : Cognitive Psychology. 110, p. 1-15 15 p.

Research output: Contribution to journalArticle

Acinonyx
Mephitidae
Animals
Songbirds
Cognition

Major Feedforward Thalamic Input Into Layer 4C of Primary Visual Cortex in Primate

Garcia-Marin, V., Kelly, J. G. & Hawken, M., Jan 1 2019, In : Cerebral cortex (New York, N.Y. : 1991). 29, 1, p. 134-149 16 p.

Research output: Contribution to journalArticle

Visual Cortex
Primates
Electron Microscopy
Cell Count

Mechanistic Characterization of (Xantphos)Ni(I)-Mediated Alkyl Bromide Activation: Oxidative Addition, Electron Transfer, or Halogen-Atom Abstraction

Diccianni, J. B., Katigbak, J., Hu, C. & Diao, T., Jan 30 2019, In : Journal of the American Chemical Society. 141, 4, p. 1788-1796 9 p.

Research output: Contribution to journalArticle

Halogens
Bromides
Chemical activation
Electrons
Atoms

Multiscale modeling and decoding algorithms for spike-field activity

Hsieh, H. L., Wong, Y. T., Pesaran, B. & Shanechi, M. M., Feb 1 2019, In : Journal of Neural Engineering. 16, 1, 016018.

Research output: Contribution to journalArticle

Decoding
Adaptive algorithms
Brain
Adaptive filters
Learning algorithms

Nucleotide Excision Repair and Impact of Site-Specific 5′,8-Cyclopurine and Bulky DNA Lesions on the Physical Properties of Nucleosomes

Shafirovich, V., Kolbanovskiy, M., Kropachev, K., Liu, Z., Cai, Y., Terzidis, M. A., Masi, A., Chatgilialoglu, C., Amin, S., Dadali, A., Broyde, S. & Geacintov, N., Jan 1 2019, (Accepted/In press) In : Biochemistry.

Research output: Contribution to journalArticle

Nucleosomes
DNA Repair
Repair
Nucleotides
Physical properties

Oculomotor inhibition reflects temporal expectations

Amit, R., Abeles, D., Carrasco-Queijeiro, M. & Yuval-Greenberg, S., Jan 1 2019, In : NeuroImage. 184, p. 279-292 14 p.

Research output: Contribution to journalArticle

Cues
Saccades
Social Adjustment
Inhibition (Psychology)
Electroencephalography

Preference for speech in infancy differentially predicts language skills and autism-like behaviors

Sorcinelli, A., Ference, J., Curtin, S. & Vouloumanos, A., Feb 1 2019, In : Journal of experimental child psychology. 178, p. 295-316 22 p.

Research output: Contribution to journalArticle

Autistic Disorder
Language
Haplorhini
Vocabulary
Parturition

SNP-ChIP: A versatile and tag-free method to quantify changes in protein binding across the genome

Vale-Silva, L. A., Markowitz, T. E. & Hochwagen, A., Jan 17 2019, In : BMC Genomics. 20, 1, 54.

Research output: Contribution to journalArticle

Protein Binding
Single Nucleotide Polymorphism
Genome
Chromatin Immunoprecipitation
Histone Code

Task representations in neural networks trained to perform many cognitive tasks

Yang, G. R., Joglekar, M. R., Song, H. F., Newsome, W. T. & Wang, X-J., Feb 1 2019, In : Nature Neuroscience. 22, 2, p. 297-306 10 p.

Research output: Contribution to journalArticle

Learning
Aptitude
Short-Term Memory
Decision Making
Neurons

Temporal attention improves perception similarly at foveal and parafoveal locations

Fernández, A., Denison, R. N. & Carrasco-Queijeiro, M., Jan 1 2019, In : Journal of vision. 19, 1, p. 1-10 10 p., 12.

Research output: Contribution to journalArticle

Visual Fields
Meridians
Reaction Time

The future of system justification theory

Jost, J., Badaan, V., Goudarzi, S., Hoffarth, M. & Mogami, M., Jan 1 2019, (Accepted/In press) In : British Journal of Social Psychology.

Research output: Contribution to journalArticle

Motivation
Ego
Anniversaries and Special Events
Research
Direction compound

The Selaginella rhizophore has a unique transcriptional identity compared with root and shoot meristems

Mello, A., Efroni, I., Rahni, R. & Birnbaum, K., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Selaginellaceae
Selaginella
Meristem
root meristems
shoot meristems

Threat Learning Promotes Generalization of Episodic Memory

Starita, F., Kroes, M. C. W., Davachi, L., Phelps, E. & Dunsmoor, J. E., Jan 1 2019, (Accepted/In press) In : Journal of Experimental Psychology: General.

Research output: Contribution to journalArticle

Episodic Memory
Learning
Shock
Aptitude
Anxiety Disorders

Toward a comprehensive model of face impressions: What we know, what we do not, and paths forward

Hehman, E., Stolier, R. M., Freeman, J., Flake, J. K. & Xie, S. Y., Jan 1 2019, (Accepted/In press) In : Social and Personality Psychology Compass. e12431.

Research output: Contribution to journalArticle

Health Services Needs and Demand
Research Personnel

Transcription shapes DNA replication initiation and termination in human cells

Chen, Y. H., Keegan, S., Kahli, M., Tonzi, P., Fenyö, D., Huang, T. T. & Smith, D., Jan 1 2019, In : Nature Structural and Molecular Biology. 26, 1, p. 67-77 11 p.

Research output: Contribution to journalArticle

DNA Replication
Genes
Polyadenylation
RNA Polymerase II
Transcription Initiation Site

Twist renormalization in molecular crystals driven by geometric frustration

Haddad, A., Aharoni, H., Sharon, E., Shtukenberg, A. G., Kahr, B. & Efrati, E., Jan 1 2019, In : Soft Matter. 15, 1, p. 116-126 11 p.

Research output: Contribution to journalArticle

Molecular crystals
Crystal symmetry
frustration
Crystalline materials
Silicone Elastomers

Understanding perirhinal contributions to perception and memory: Evidence through the lens of selective perirhinal damage

Inhoff, M. C., Heusser, A. C., Tambini, A., Martin, C. B., O'Neil, E. B., Köhler, S., Meager, M. R., Blackmon, K., Vazquez, B., Devinsky, O. & Davachi, L., Feb 18 2019, In : Neuropsychologia. 124, p. 9-18 10 p.

Research output: Contribution to journalArticle

Lenses
Temporal Lobe
Visual Perception
Cognition
Tail
Ego
2018

5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in human cells

Ji, S., Fu, I., Naldiga, S., Shao, H., Basu, A. K., Broyde, S. & Tretyakova, N. Y., Oct 12 2018, In : Nucleic acids research. 46, 18, 1 p.

Research output: Contribution to journalArticle

DNA Replication
Mutation
DNA
link protein
5-formylcytosine

5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in human cells

Ji, S., Fu, I., Naldiga, S., Shao, H., Basu, A. K., Broyde, S. & Tretyakova, N. Y., Jan 1 2018, In : Nucleic acids research. 46, 13, p. 6455-6469 15 p.

Research output: Contribution to journalArticle

DNA Replication
Mutation
DNA
Proteins
Peptides

A (+)-Larixol Congener with High Affinity and Subtype Selectivity toward TRPC6

Häfner, S., Burg, F., Kannler, M., Urban, N., Mayer, P., Dietrich, A., Trauner, D., Broichhagen, J. & Schaefer, M., Jan 1 2018, (Accepted/In press) In : ChemMedChem.

Research output: Contribution to journalArticle

Lung
Transplantation (surgical)
Reperfusion
Transient Receptor Potential Channels
Edema

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. T. & Saparbaev, M., Jan 1 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

DNA Glycosylases
glycosylases
Mutagenesis
Adenine
adenine
Students
Self Report

A coupled ionization-conformational equilibrium is required to understand the properties of ionizable residues in the hydrophobic interior of staphylococcal nuclease

Liu, J., Swails, J., Zhang, J., He, X. & Roitberg, A. E., Feb 7 2018, In : Journal of the American Chemical Society. 140, 5, p. 1639-1648 10 p.

Research output: Contribution to journalArticle

Micrococcal Nuclease
Ionization
Protonation
Proteins
Molecular Dynamics Simulation

Actin-myosin force generation and symmetry breaking in the model contractile fiber

Fogelson, B. & Mogilner, A., Jan 1 2018, In : SIAM Journal on Applied Mathematics. 78, 3, p. 1754-1777 24 p.

Research output: Contribution to journalArticle

Myosin
Actin
Symmetry Breaking
Fiber
Fibers

Activation of a novel p70 S6 kinase 1-dependent intracellular cascade in the basolateral nucleus of the amygdala is required for the acquisition of extinction memory

Huynh, T. N., Santini, E., Mojica, E., Fink, A. E., Hall, B. S., Fetcho, R. N., Grosenick, L., Deisseroth, K., Ledoux, J., Liston, C. & Klann, E., Jun 1 2018, In : Molecular Psychiatry. 23, 6, p. 1394-1401 8 p.

Research output: Contribution to journalArticle

70-kDa Ribosomal Protein S6 Kinases
Amygdala
Ribosomal Protein S6 Kinases
Extracellular Signal-Regulated MAP Kinases
Basolateral Nuclear Complex

Acute Stress Throughout the Memory Cycle: Diverging Effects on Associative and Item Memory

Goldfarb, E. V., Tompary, A., Davachi, L. & Phelps, E., Sep 17 2018, (Accepted/In press) In : Journal of Experimental Psychology: General.

Research output: Contribution to journalArticle

Hydrocortisone
Arousal
Recognition (Psychology)

Addendum: Preventing the return of fear in humans using reconsolidation update mechanisms

Schiller, D., Monfils, M. H., Raio, C. M., Johnson, D. C., Ledoux, J. & Phelps, E., Oct 1 2018, In : Nature. 562, 7727, p. E21

Research output: Contribution to journalArticle

Adventures with RNA graphs

Schlick, T., Jan 1 2018, (Accepted/In press) In : Methods.

Research output: Contribution to journalArticle

RNA
Polynucleotides
Hydrogen

A Dynamic Bayesian Observer Model Reveals Origins of Bias in Visual Path Integration

Lakshminarasimhan, K. J., Petsalis, M., Park, H., DeAngelis, G. C., Pitkow, X. & Angelaki, D., Jul 11 2018, In : Neuron. 99, 1, p. 194-206.e5

Research output: Contribution to journalArticle

Optic Flow
Uncertainty
Reward

A Dynamic Structure of Social Trait Space

Stolier, R. M., Hehman, E. & Freeman, J., Jan 1 2018, (Accepted/In press) In : Trends in Cognitive Sciences.

Research output: Contribution to journalArticle

Personality
Research
Sociological Factors

A feed-forward relay integrates the regulatory activities of bicoid and orthodenticle via sequential binding to suboptimal sites

Datta, R. R., Ling, J., Kurland, J., Ren, X., Xu, Z., Yucel, G., Moore, J., Shokri, L., Baker, I., Bishop, T., Struffi, P., Levina, R., Bulyk, M. L., Johnston, R. J. & Small, S., May 1 2018, In : Genes and Development. 32, 9-10, p. 723-736 14 p.

Research output: Contribution to journalArticle

Nucleotide Motifs
Embryonic Structures
Homeodomain Proteins
Drosophila melanogaster
Transcriptional Activation