Faculty of Arts and Science

Research Output 1960 2017

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Review article
2017

Are all repeats created equal? Understanding DNA repeats at an individual level

Yang, J. & Li, F. Feb 1 2017 In : Current Genetics. 63, 1, p. 57-63 7 p.

Research output: Research - peer-reviewReview article

DNA
Centromere
Epigenomics
Chromatin
Genome

Are stereotypes accurate? A perspective from the cognitive science of concepts

Bian, L. & Cimpian, A. 2017 In : Behavioral and Brain Sciences. 40, e3

Research output: Research - peer-reviewReview article

stereotype
science
Group
Stereotypes
Cognitive Science

Biophysically motivated regulatory network inference: Progress and prospects

Äijö, T. & Bonneau, R. Jan 1 2017 In : Human Heredity. 81, 2, p. 62-77 16 p.

Research output: Research - peer-reviewReview article

Technology
Chromatin
Research Design
Learning
Genome

Coherent variability: The self with significant others in memory and context

Andersen, S. M., Tuskeviciute, R. & Przybylinski, E. 2017 In : Social Cognition. 35, 2, p. 107-123 17 p.

Research output: Research - peer-reviewReview article

Cues
Research
Transference (Psychology)

Computational psychiatry and the challenge of schizophrenia

Krystal, J. H., Murray, J. D., Chekroud, A. M., Corlett, P. R., Yang, G., Wang, X. J. & Anticevic, A. 2017 In : Schizophrenia Bulletin. 43, 3, p. 473-475 3 p.

Research output: Research - peer-reviewReview article

Psychiatry
Schizophrenia
Datasets
Learning
Research

Ferroptosis: A Regulated Cell Death Nexus Linking Metabolism, Redox Biology, and Disease

Stockwell, B. R. , Friedmann Angeli, J. P. , Bayir, H. , Bush, A. I. , Conrad, M. , Dixon, S. J. , Fulda, S. , Gascón, S. , Hatzios, S. K. , Kagan, V. E. , Noel, K. , Jiang, X. , Linkermann, A. , Murphy, M. E. , Overholtzer, M. , Oyagi, A. , Pagnussat, G. C. , Park, J. , Ran, Q. , Rosenfeld, C. S. & 7 others Salnikow, K., Tang, D., Torti, F. M., Torti, S. V., Toyokuni, S., Woerpel, K. A. & Zhang, D. D. Oct 5 2017 In : Cell. 171, 2, p. 273-285 13 p.

Research output: Research - peer-reviewReview article

Oxidation-Reduction
Cell Death
Nexus
Cell death
Metabolism

From attachment to independence: stress hormone control of ecologically relevant emergence of infants’ responses to threat

Santiago, A., Aoki, C. & Sullivan, R. M. Apr 1 2017 In : Current Opinion in Behavioral Sciences. 14, p. 78-85 8 p.

Research output: Research - peer-reviewReview article

Corticosterone
Amygdala
Fear
Hormones
Learning

Getting the flu: 5 key facts about influenza virus evolution

Johnson, K. E. E., Song, T., Greenbaum, B. & Ghedin, E. Aug 1 2017 In : PLoS Pathogens. 13, 8, e1006450

Research output: Research - peer-reviewReview article

Impaired Tuning of Neural Ensembles and the Pathophysiology of Schizophrenia: A Translational and Computational Neuroscience Perspective

Krystal, J. H., Anticevic, A., Yang, G. J., Dragoi, G., Driesen, N. R., Wang, X. J. & Murray, J. D. May 15 2017 In : Biological Psychiatry. 81, 10, p. 874-885 12 p.

Research output: Research - peer-reviewReview article

Neurosciences
Schizophrenia
Excitatory Amino Acid Antagonists
N-Methyl-D-Aspartate Receptors
Short-Term Memory

Lay listeners can evaluate the pitch accuracy of operatic voices

Larrouy-Maestri, P., Morsomme, D., Magis, D. & Poeppel, D. Apr 1 2017 In : Music Perception. 34, 4, p. 489-495 7 p.

Research output: Research - peer-reviewReview article

Listeners
Lay
Music
Acoustics
Singers

Memory Takes Time

Kukushkin, N. V. & Carew, T. J. Jul 19 2017 In : Neuron. 95, 2, p. 259-279 21 p.

Research output: Research - peer-reviewReview article

Social Adjustment
Neuronal Plasticity
Aptitude
Fourier Analysis
Nervous System

Neuroscience Needs Behavior: Correcting a Reductionist Bias

Krakauer, J. W., Ghazanfar, A. A., Gomez-Marin, A., MacIver, M. A. & Poeppel, D. Feb 8 2017 In : Neuron. 93, 3, p. 480-490 11 p.

Research output: Research - peer-reviewReview article

Neurosciences
Brain
Connectome
Optogenetics
Causality

Parsing learning in networks using brain–machine interfaces

Orsborn, A. L. & Pesaran, B. Oct 1 2017 In : Current Opinion in Neurobiology. 46, p. 76-83 8 p.

Research output: Research - peer-reviewReview article

Brain-Computer Interfaces
Learning
Brain
Therapeutics
Paralysis

Quantifying protein (dis)order: A study of bacteria, yeast, and mammalian cells maps the melting behavior of cellular proteins

Vogel, C. Feb 24 2017 In : Science. 355, 6327, p. 794-795 2 p.

Research output: Research - peer-reviewReview article

Reactions of Allylmagnesium Halides with Carbonyl Compounds: Reactivity, Structure, and Mechanism

Bartolo, N. D., Read, J. A., Valentín, E. M. & Woerpel, K. A. Aug 1 2017 In : Synthesis (Germany). 49, 15, p. 3237-3246 10 p.

Research output: Research - peer-reviewReview article

Carbonyl compounds
Aldehydes
Ketones
Agglomeration
X rays

Removal of oxidatively generated DNA damage by overlapping repair pathways

Shafirovich, V. & Geacintov, N. E. Jun 1 2017 In : Free Radical Biology and Medicine. 107, p. 53-61 9 p.

Research output: Research - peer-reviewReview article

Repair
DNA
guanidinohydantoin
DNA Repair
DNA Damage

Repair-Resistant DNA Lesions

Geacintov, N. E. & Broyde, S. Aug 21 2017 In : Chemical Research in Toxicology. 30, 8, p. 1517-1548 32 p.

Research output: Research - peer-reviewReview article

Repair
DNA
DNA Repair
Nucleotides
Substrates

Retinal perception and ecological significance of color vision in insects

Lebhardt, F. & Desplan, C. Dec 1 2017 In : Current Opinion in Insect Science. 24, p. 75-83 9 p.

Research output: Research - peer-reviewReview article

color vision
wavelengths
eyes
insects
color

Sleep regulation of the distribution of cortical firing rates

Levenstein, D., Watson, B. O., Rinzel, J. & Buzsáki, G. Jun 1 2017 In : Current Opinion in Neurobiology. 44, p. 34-42 9 p.

Research output: Research - peer-reviewReview article

Sleep
Neurons
Brain

Stress and the trade-off between hippocampal and striatal memory

Goldfarb, E. V. & Phelps, E. A. Apr 1 2017 In : Current Opinion in Behavioral Sciences. 14, p. 47-53 7 p.

Research output: Research - peer-reviewReview article

Corpus Striatum
Psychopathology
Maintenance
Research Personnel

The development of motor behavior

Adolph, K. E. & Franchak, J. M. Jan 1 2017 In : Wiley Interdisciplinary Reviews: Cognitive Science. 8, 1-2, e1430

Research output: Research - peer-reviewReview article

Infant Behavior
Motor Skills
Locomotion
Posture
Research

The ebb and flow of experience determines the temporal structure of memory

Clewett, D. & Davachi, L. Oct 1 2017 In : Current Opinion in Behavioral Sciences. 17, p. 186-193 8 p.

Research output: Research - peer-reviewReview article

Episodic Memory
Cues

The intersection between ocular and manual motor control: Eye-hand coordination in acquired brain injury

Rizzo, J. R., Hosseini, M., Wong, E. A., Mackey, W. E., Fung, J. K., Ahdoot, E., Rucker, J. C., Raghavan, P., Landy, M. S. & Hudson, T. E. Jun 1 2017 In : Frontiers in Neurology. 8, JUN, 227

Research output: Research - peer-reviewReview article

Brain Injuries
Hand
Chronic Disease
Biomarkers
Neurophysiology

The lung mycobiome in the next-generation sequencing era

Tipton, L., Ghedin, E. & Morris, A. Apr 3 2017 In : Virulence. 8, 3, p. 334-341 8 p.

Research output: Research - peer-reviewReview article

Lung
Mycobiome
Fungi
Respiratory Tract Diseases
Names

The role of 'omics' in the quest to eliminate human filariasis

Lustigman, S., Grote, A. & Ghedin, E. Apr 20 2017 In : PLoS Neglected Tropical Diseases. 11, 4, e0005464

Research output: Research - peer-reviewReview article

Timing temporal transitions during brain development

Rossi, A. M., Fernandes, V. M. & Desplan, C. Feb 1 2017 In : Current Opinion in Neurobiology. 42, p. 84-92 9 p.

Research output: Research - peer-reviewReview article

Brain
Aptitude
Neural Stem Cells
Invertebrates
Nervous System

Working class conservatism: a system justification perspective

Jost, J. T. Dec 1 2017 In : Current Opinion in Psychology. 18, p. 73-78 6 p.

Research output: Research - peer-reviewReview article

Vulnerable Populations
Politics
Social Psychology
Social Sciences
Uncertainty
2016

3D DNA crystals and nanotechnology

Paukstelis, P. J. & Seeman, N. C. Aug 1 2016 In : Crystals. 6, 8, 97

Research output: Research - peer-reviewReview article

nanotechnology
deoxyribonucleic acid
crystals
Nanotechnology
Crystals

A Case for Distributed Control of Local Stem Cell Behavior in Plants

Rahni, R., Efroni, I. & Birnbaum, K. D. Sep 26 2016 In : Developmental Cell. 38, 6, p. 635-642 8 p.

Research output: Research - peer-reviewReview article

Stem Cells
Meristem
Mechanics

Accurate Calculation of Electric Fields Inside Enzymes

Wang, X., He, X. & Zhang, J. Z. H. 2016 In : Methods in enzymology. 578, p. 45-72 28 p.

Research output: Research - peer-reviewReview article

Enzymes
Proteins
Electric fields
Catalytic Domain
Mutation

Agent-based modeling: Case study in cleavage furrow models

Mogilner, A. & Manhart, A. Nov 7 2016 In : Molecular Biology of the Cell. 27, 22, p. 3379-3384 6 p.

Research output: Research - peer-reviewReview article

Systems Analysis
Cell Biology
History
Recognition (Psychology)

Beyond the turing test

Marcus, G., Rossi, F. & Veloso, M. 2016 In : AI Magazine. 37, 1, p. 3-4 2 p.

Research output: Research - peer-reviewReview article

Brain structure and dynamics across scales: In search of rules

Wang, X. J. & Kennedy, H. Apr 1 2016 In : Current Opinion in Neurobiology. 37, p. 92-98 7 p.

Research output: Research - peer-reviewReview article

Brain
Fathers

Charting the landscape of priority problems in psychiatry, part 1: Classification and diagnosis

Stephan, K. E., Bach, D. R., Fletcher, P. C., Flint, J., Frank, M. J., Friston, K. J., Heinz, A., Huys, Q. J. M., Owen, M. J., Binder, E. B., Dayan, P., Johnstone, E. C., Meyer-Lindenberg, A., Montague, P. R., Schnyder, U., Wang, X. J. & Breakspear, M. Jan 1 2016 In : The Lancet Psychiatry. 3, 1, p. 77-83 7 p.

Research output: Research - peer-reviewReview article

Psychiatry
Research Personnel
Research
Therapeutics
Genetic Research

Charting the landscape of priority problems in psychiatry, part 2: Pathogenesis and aetiology

Stephan, K. E., Binder, E. B., Breakspear, M., Dayan, P., Johnstone, E. C., Meyer-Lindenberg, A., Schnyder, U., Wang, X. J., Bach, D. R., Fletcher, P. C., Flint, J., Frank, M. J., Heinz, A., Huys, Q. J. M., Montague, P. R., Owen, M. J. & Friston, K. J. Jan 1 2016 In : The Lancet Psychiatry. 3, 1, p. 84-90 7 p.

Research output: Research - peer-reviewReview article

Psychiatry
Mental Disorders
Research
Direction compound

How many ways are there to make a root?

Birnbaum, K. D. Dec 1 2016 In : Current Opinion in Plant Biology. 34, p. 61-67 7 p.

Research output: Research - peer-reviewReview article

blood vessels
cytokinins
ontogeny
auxins
embryogenesis

Multi-level regulation of cellular glycosylation: from genes to transcript to enzyme to structure

Neelamegham, S. & Mahal, L. K. Oct 1 2016 In : Current Opinion in Structural Biology. 40, p. 145-152 8 p.

Research output: Research - peer-reviewReview article

Glycosylation
Polysaccharides
Enzymes
Genes
Proteins

Network inference from multimodal data: A review of approaches from infectious disease transmission

Ray, B., Ghedin, E. & Chunara, R. Dec 1 2016 In : Journal of Biomedical Informatics. 64, p. 44-54 11 p.

Research output: Research - peer-reviewReview article

Infectious Disease Transmission
Electric power transmission networks
Metagenomics
Pandemics
Neurosciences

Nitrate Transport, Sensing, and Responses in Plants

O'Brien, J. A. A., Vega, A., Bouguyon, E., Krouk, G., Gojon, A., Coruzzi, G. & Gutiérrez, R. A. A. 2016 In : Molecular Plant. 9, 6, p. 837-856 20 p.

Research output: Research - peer-reviewReview article

plant response
nitrates
Nitrates
Food
nutrients

Opportunities and challenges in modeling human brain disorders in transgenic primates

Jennings, C. G., Landman, R., Zhou, Y., Sharma, J., Hyman, J., Movshon, J. A., Qiu, Z., Roberts, A. C., Roe, A. W., Wang, X., Zhou, H., Wang, L., Zhang, F., Desimone, R. & Feng, G. Sep 1 2016 In : Nature Neuroscience. 19, 9, p. 1123-1130 8 p.

Research output: Research - peer-reviewReview article

Brain Diseases
Primates
Brain
Research
Primate Diseases

Programmed cell death acts at different stages of Drosophila neurodevelopment to shape the central nervous system

Pinto-Teixeira, F., Konstantinides, N. & Desplan, C. Aug 1 2016 In : FEBS Letters. p. 2435-2453 19 p.

Research output: Research - peer-reviewReview article

Drosophila
Cell Death
Central Nervous System
Neurology
Cell death

Soft Crystals in Flatland: Unraveling Epitaxial Growth

Ward, M. D. Jul 26 2016 In : ACS Nano. 10, 7, p. 6424-6428 5 p.

Research output: Research - peer-reviewReview article

crystals
Epitaxial growth
Crystals
Substrates
epitaxy

Three challenges for connecting model to mechanism in decision-making

Churchland, A. K. & Kiani, R. Oct 1 2016 In : Current Opinion in Behavioral Sciences. 11, p. 74-80 7 p.

Research output: Research - peer-reviewReview article

Decision Making
Neurons
Animal Models
Datasets

Transcriptional Control of Developmental Cell Behaviors

Bernadskaya, Y. & Christiaen, L. Oct 6 2016 In : Annual Review of Cell and Developmental Biology. 32, p. 77-101 25 p.

Research output: Research - peer-reviewReview article

Gene Regulatory Networks
Cues
Cell-Matrix Junctions
Developmental Genes
Cell Shape

Using neuroscience to help understand fear and anxiety: A two-system framework

LeDoux, J. E. & Pine, D. S. Nov 1 2016 In : American Journal of Psychiatry. 173, 11, p. 1083-1093 11 p.

Research output: Research - peer-reviewReview article

Neurosciences
Fear
Anxiety
Brain
Anxiety Disorders
2015

Comprehensive imaging of cortical networks

Peron, S., Chen, T. W. & Svoboda, K. Jun 1 2015 In : Current Opinion in Neurobiology. 32, p. 115-123 9 p.

Research output: Research - peer-reviewReview article

Neurons
Brain
Optical Imaging
Temporal Lobe
Calcium

Human V4 and ventral occipital retinotopic maps

Winawer, J. & Witthoft, N. Apr 15 2015 In : Visual Neuroscience. 32, e020

Research output: Research - peer-reviewReview article

Occipital Lobe
Macaca
Neuroimaging
History
Brain

Sensitive Periods in Affective Development: Nonlinear Maturation of Fear Learning

Hartley, C. A. & Lee, F. S. Jan 1 2015 In : Neuropsychopharmacology. 40, 1, p. 50-60 11 p.

Research output: Research - peer-reviewReview article

Fear
Learning
Brain
Research
Psychological Extinction

The neuroscience of adolescent decision-making

Hartley, C. A. & Somerville, L. H. Oct 1 2015 In : Current Opinion in Behavioral Sciences. 5, p. 108-115 8 p.

Research output: Research - peer-reviewReview article

Neurosciences
Decision Making
Uncertainty
Corpus Striatum
Reward
2014

Refining and expanding the proposal of an inherence heuristic in human understanding

Cimpian, A. & Salomon, E. Oct 12 2014 In : Behavioral and Brain Sciences. 37, 5, p. 506-527 22 p.

Research output: Research - peer-reviewReview article

Heuristics
heuristics
Memory Retrieval
Cognitive Processes
Entity