Research Output

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2020

Exploring Cation Mediated DNA Interactions Using Computer Simulations

He, W. & Kirmizialtin, S., Jan 1 2020, Lecture Notes in Bioengineering. Springer, p. 51-63 13 p. (Lecture Notes in Bioengineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene regulatory networks during the development of the Drosophila visual system

Chen, Y. C. & Desplan, C., 2020, Current Topics in Developmental Biology. Academic Press Inc., p. 89-125 37 p. (Current Topics in Developmental Biology; vol. 139).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear actin and myosin in chromatin regulation and maintenance of genome integrity

Venit, T., Mahmood, S. R., Endara-Coll, M. & Percipalle, P., 2020, (Accepted/In press) International Review of Cell and Molecular Biology. Elsevier Inc., (International Review of Cell and Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Brownian Winding Fields

Jan, Y. L., 2019, Lecture Notes in Mathematics. Springer, p. 487-492 6 p. (Lecture Notes in Mathematics; vol. 2252).

Research output: Chapter in Book/Report/Conference proceedingChapter

Portable spelling corrector for a less-resourced language: Amharic

Bouamor, H., Habash, N., Salameh, M., Zaghouani, W., Rambow, O., Abdulrahim, D., Obeid, O., Khalifa, S., Eryani, F., Erdmann, A. & Oflazer, K., 2019, LREC 2018 - 11th International Conference on Language Resources and Evaluation. Isahara, H., Maegaard, B., Piperidis, S., Cieri, C., Declerck, T., Hasida, K., Mazo, H., Choukri, K., Goggi, S., Mariani, J., Moreno, A., Calzolari, N., Odijk, J. & Tokunaga, T. (eds.). European Language Resources Association (ELRA), p. 4127-4132 6 p. (LREC 2018 - 11th International Conference on Language Resources and Evaluation).

Research output: Chapter in Book/Report/Conference proceedingChapter

Random Flows Defined by Markov Loops

Jan, Y. L., 2019, Lecture Notes in Mathematics. Springer, p. 479-486 8 p. (Lecture Notes in Mathematics; vol. 2252).

Research output: Chapter in Book/Report/Conference proceedingChapter

The Role of Tertiary Structure in MicroRNA Target Recognition

Gan, H. H. & Gunsalus, K. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 43-64 22 p. (Methods in Molecular Biology; vol. 1970).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

A Distance Formula Related to a Family of Projections Orthogonal to Their Symmetries

Spitkovsky, I. M., 2018, Operator Theory: Advances and Applications. Springer International Publishing, p. 371-376 6 p. (Operator Theory: Advances and Applications; vol. 267).

Research output: Chapter in Book/Report/Conference proceedingChapter

Equations for polymeric materials

Masmoudi, N., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 973-1005 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Low mach number limits and acoustic waves

Jiang, N. & Masmoudi, N., Apr 19 2018, Handbook of Mathematical Analysis in Mechanics of Viscous Fluids. Springer International Publishing, p. 2721-2770 50 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nondestructive testing of objects from cultural heritage with NMR

Baias, M. & Blümich, B., Jun 13 2018, Modern Magnetic Resonance. Springer International Publishing, p. 293-304 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

On the partial indices of triangular matrix functions with prescribed indices of their diagonal entries

Harutyunyan, K. V., Kamalyan, A. G. & Spitkovsky, I. M., Jan 1 2018, Operator Theory: Advances and Applications. Springer International Publishing, p. 251-285 35 p. (Operator Theory: Advances and Applications; vol. 262).

Research output: Chapter in Book/Report/Conference proceedingChapter

Remembering Leiba Rodman 1949–2015, at IWOTA 2015

Ball, J. A., Kaashoek, M. A., Ran, A. C. M. & Spitkovsky, I. M., Jan 1 2018, Operator Theory: Advances and Applications. Springer International Publishing, p. 3-12 10 p. (Operator Theory: Advances and Applications; vol. 262).

Research output: Chapter in Book/Report/Conference proceedingChapter

Robert Sheckley’s Answerer for two orthogonal projections

Böttcher, A. & Spitkovsky, I. M., 2018, Operator Theory: Advances and Applications. Springer International Publishing, p. 125-138 14 p. (Operator Theory: Advances and Applications; vol. 268).

Research output: Chapter in Book/Report/Conference proceedingChapter

The arabian gulf

Vaughan, G. O., Al-Mansoori, N. & Burt, J. A., Jan 1 2018, World Seas: An Environmental Evaluation Volume II: The Indian Ocean to the Pacific. Elsevier, p. 1-23 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The madar Arabic dialect corpus and lexicon

Bouamor, H., Habash, N., Salameh, M., Zaghouani, W., Rambow, O., Abdulrahim, D., Obeid, O., Khalifa, S., Eryani, F., Erdmann, A. & Oflazer, K., 2018, LREC 2018 - 11th International Conference on Language Resources and Evaluation. European Language Resources Association (ELRA), p. 3387-3396 10 p. (LREC 2018 - 11th International Conference on Language Resources and Evaluation).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Bioactive Compounds From Microalgae: Current Development and Prospects

Fu, W., Nelson, D. R., Yi, Z., Xu, M., Khraiwesh, B., Jijakli, K., Chaiboonchoe, A., Alzahmi, A., Al-Khairy, D., Brynjolfsson, S. & Salehi-Ashtiani, K., 2017, Studies in Natural Products Chemistry. Elsevier B.V., p. 199-225 27 p. (Studies in Natural Products Chemistry; vol. 54).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysical properties of dynein in vivo

Shubeita, G. T., Reddy, B. J. N. & Gross, S. P., Nov 28 2017, Dyneins: Dynein Mechanics, Dysfunction, and Disease: Second Edition. Elsevier, Vol. 2. p. 136-151 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Expression of plant receptor kinases in E. coli

Agha, M. A., Lightfoot, D. & Afzal, A. J., 2017, Methods in Molecular Biology. Humana Press Inc., p. 3-20 18 p. (Methods in Molecular Biology; vol. 1621).

Research output: Chapter in Book/Report/Conference proceedingChapter

Knots

Bilbeisi, R. A. & Trabolsi, A., Jun 22 2017, Supramolecular Engineering: Discrete Molecular Assemblies. Elsevier Inc., Vol. 6. p. 269-277 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Making It New Again: Insight Into Liver Development, Regeneration, and Disease From Zebrafish Research

Wang, S., Miller, S. R., Ober, E. A. & Sadler, K. C., 2017, Current Topics in Developmental Biology. Academic Press Inc., p. 161-195 35 p. (Current Topics in Developmental Biology; vol. 124).

Research output: Chapter in Book/Report/Conference proceedingChapter

Numerical ranges of 4-By-4 nilpotent matrices: Flat portions on the boundary

Militzer, E., Patton, L. J., Spitkovsky, I. M. & Tsai, M. C., 2017, Operator Theory: Advances and Applications. Springer International Publishing, p. 561-591 31 p. (Operator Theory: Advances and Applications; vol. 259).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pattern recognition

O’Rourke, J. & Toussaint, G. T., Jan 1 2017, Handbook of Discrete and Computational Geometry, Third Edition. CRC Press, p. 1421-1450 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Restricted invertibility revisited

Naor, A. & Youssef, P., Jan 1 2017, A Journey through Discrete Mathematics: A Tribute to Jiri Matousek. Springer International Publishing, p. 657-691 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The beginning (The way i remember it)

Spitkovsky, I. M., 2017, Operator Theory: Advances and Applications. Springer International Publishing, p. 41-46 6 p. (Operator Theory: Advances and Applications; vol. 259).

Research output: Chapter in Book/Report/Conference proceedingChapter

The rise and fall of violent extremism: The science behind community-based interventions

Bélanger, J. J., Jan 1 2017, The Motivation-Cognition Interface: From the Lab to the Real World: A Festschrift in Honor of Arie W. Kruglanski. Taylor and Francis, p. 152-177 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Understanding mood disorders using electrophysiology and circuit breaking

Liu, H. & Chaudhury, D., Jul 24 2017, Decoding Neural Circuit Structure and Function: Cellular Dissection Using Genetic Model Organisms. Springer International Publishing, p. 343-370 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

From silos to synergies: The effects of construal level on political polarization

Napier, J. L. & Luguri, J. B., Feb 17 2016, Social Psychology of Political Polarization. Taylor and Francis Inc., p. 143-161 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scaling limits, brownian loops, and conformal fields

Camia, F., Dec 15 2016, Advances in Disordered Systems, Random Processes and Some Applications. Cambridge University Press, p. 205-269 65 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Zebrafish discoveries in cancer epigenetics

Chernyavskaya, Y., Kent, B. & Sadler, K. C., 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 169-197 29 p. (Advances in Experimental Medicine and Biology; vol. 916).

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Antidominance as a motive of low-power groups in conflict

Henry, P. J., Jan 1 2015, The Exercise of Power in Communication: Devices, Reception and Reaction. Palgrave Macmillan, p. 287-311 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Antidominance as a Motive of Low-Power Groups in Conflict

Henry, P. J., May 5 2015, The Exercise of Power in Communication: Devices, Reception and Reaction. Palgrave Macmillan, p. 287-311 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Functional MRI: Approaches to cognitive neuroscience applications

D'Esposito, M., Sreenivasan, K. & Kayser, A., Sep 16 2015, fMRI: From Nuclear Spins to Brain Functions. Springer US, p. 523-555 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT

Kirmizialtin, S., Hennelly, S. P., Schug, A., Onuchic, J. N. & Sanbonmatsu, K. Y., 2015, Methods in Enzymology. Academic Press Inc., p. 215-234 20 p. (Methods in Enzymology; vol. 553).

Research output: Chapter in Book/Report/Conference proceedingChapter

Modeling Musical Rhythm Mutations with Geometric Quantization

Toussaint, G. T., May 8 2015, Mathematical and Computational Modeling: With Applications in Natural and Social Sciences, Engineering, and the Arts. Wiley, p. 299-308 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Using molecular simulation to model high-resolution cryo-EM reconstructions

Kirmizialtin, S., Loerke, J., Behrmann, E., Spahn, C. M. T. & Sanbonmatsu, K. Y., 2015, Methods in Enzymology. 1 ed. Academic Press Inc., p. 497-514 18 p. (Methods in Enzymology; vol. 558, no. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

De-radicalising the liberation tigers of tamil eelam (LTTE): Some preliminary findings

Kruglanski, A. W., Gelfand, M. J., Bélanger, J. J., Gunaratna, R. & Hettiarachchi, M., Jan 1 2014, Prisons, Terrorism and Extremism: Critical Issues in Management, Radicalisation and Reform. Taylor and Francis, p. 183-196 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

New insight into role of myosin motors for activation of RNA polymerases

Sarshad, A. A. & Percipalle, P., 2014, International Review of Cell and Molecular Biology. Elsevier Inc., p. 183-230 48 p. (International Review of Cell and Molecular Biology; vol. 311).

Research output: Chapter in Book/Report/Conference proceedingChapter

On the factorization of some block triangular almost periodic matrix functions

Bastos, M. A., Bravo, A., Karlovich, Y. I. & Spitkovsky, I. M., 2014, Operator Theory: Advances and Applications. Springer International Publishing, p. 25-52 28 p. (Operator Theory: Advances and Applications; vol. 242).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sociocultural and functional approaches to autobiographical memory

Fivush, R. & Waters, T. E. A., Jan 1 2014, The SAGE Handbook of Applied Memory. SAGE Publications Inc., p. 221-238 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The natural order of things: The motivated underpinnings of naturalistic explanations for inequality

Napier, J. L., Jan 1 2014, Motivation and Its Regulation: The Control Within. Taylor and Francis, p. 299-311 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Construction of 3D triangles on Dupin cyclides

Belbis, B., Garnier, L. & Foufou, S., Apr 30 2013, Intelligent Computer Vision and Image Processing: Innovation, Application, and Design. IGI Global, p. 113-127 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Direct Evidence of Solid-State Tautomerism by Diffraction Methods: Isomers, Equilibria, and Kinetics

Naumov, P. & Sahoo, S. C., Oct 25 2013, Tautomerism: Methods and Theories. Wiley, p. 197-212 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Inferring intention through state representations in cooperative human-robot environments

Schlenoff, C., Pietromartire, A., Kootbally, Z., Balakirsky, S. & Foufou, S., Jun 30 2013, Engineering Creative Design in Robotics and Mechatronics. IGI Global, p. 122-151 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Isoprenylated Protein Peptidase Rce1p

Dore, T. M. & Schmidt, W. K., Aug 29 2013, Handbook of Proteolytic Enzymes. Elsevier Ltd, Vol. 2. p. 1720-1726 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

On the kernel and cokernel of some toeplitz operators

Ehrhardt, T. & Spitkovsky, I. M., Jan 1 2013, Operator Theory: Advances and Applications. Springer International Publishing, p. 127-144 18 p. (Operator Theory: Advances and Applications; vol. 237).

Research output: Chapter in Book/Report/Conference proceedingChapter

Percolation methods for SEIR epidemics on graphs

Gandolfi, A., Jan 1 2013, Dynamic Models of Infectious Diseases: Volume 2: Non Vector-Borne Diseases. Springer New York, p. 31-58 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The self-conscious emotions of guilt, shame and pride in education

Farouk, S., Jan 1 2013, Handbook of Psychology of Emotions: Recent Theoretical Perspectives and Novel Empirical Findings. Nova Science Publishers, Inc., Vol. 1. p. 143-158 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vision

Vogt, N. & Desplan, C., Jan 1 2013, Behavioral Genetics of the Fly (Drosophila Melanogaster). Cambridge University Press, p. 37-48 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Chemical X-ray photodiffraction: Principles, examples, and perspectives

Naumov, P., 2012, Advanced X-Ray Crystallography. Rissanen, K. (ed.). p. 111-132 22 p. (Topics in Current Chemistry; vol. 315).

Research output: Chapter in Book/Report/Conference proceedingChapter