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2020
2019

Why be Natural?

Bain, J., Sep 1 2019, In : Foundations of Physics. 49, 9, p. 898-914 17 p.

Research output: Contribution to journalArticle

2018

ARIES: Enabling visual exploration and organization of art image collections

Crissaff, L., Wood Ruby, L., Deutch, S., Dubois, R. L., Fekete, J. D., Freire, J. & Silva, C., Jan 1 2018, In : IEEE Computer Graphics and Applications. 38, 1, p. 91-108 18 p.

Research output: Contribution to journalArticle

Community change and resident needs: Designing a Participatory Action Research study in Metropolitan Boston

Arcaya, M. C., Schnake-Mahl, A., Binet, A., Simpson, S., Church, M. S., Gavin, V., Coleman, B., Levine, S., Nielsen, A., Carroll, L., Ursprung, S., Wood, B., Reeves, H., Keppard, B., Sportiche, N., Partirdge, J., Figueora, J., Frakt, A., Alfonzo, M., Abreu, D. & 50 others, Abreu, T., Ambroise, T., Andrade, E., Barrientos, E., Baty, A., Baty, C., Benner, K., Bennett, C., Blanchette, A., Bongiovanni, R., Cardile, O., Corchado, C., Dixon, C., Dodson, C., Dominguez, J., Durena, M., Fiestas, Y., Genty, J., Graffam, N., Gonzalez, A., Grigsby, E., Hayden, P., Alvado, S. H., Hernandez, Z., Hodes, I., Johnson, J., Keefe, K., Latimer, K., Logg, C., Martinez, N., Mboup, K., McPhorson, D., Meacham, S., Mohammed, D., Moss, E., O'Brien, K., Owens, L., Partridge, J., Johnson, L. P., Power, M. B., Rebelo, T., Remy, R., Roderigues, G., Sabtow, Q., Sanchez, C., Seeder, A., Sepulveda, R., West, E., Winters, L. & Youmans, T., Jul 2018, In : Health and Place. 52, p. 221-230 10 p.

Research output: Contribution to journalArticle

Open Access

Shifting expectations: Understanding youth employees’ handoffs in a 3D print shop

Easley, W., Hamidi, F., Lutters, W. G. & Hurst, A., Nov 2018, In : Proceedings of the ACM on Human-Computer Interaction. 2, CSCW, 47.

Research output: Contribution to journalArticle

Understanding apartment end-use water consumption in two green residential multistory buildings

Jordán-Cuebas, F., Krogmann, U., Andrews, C. J., Senick, J. A., Hewitt, E. L., Wener, R. E., Allacci, M. S. & Plotnik, D., Apr 1 2018, In : Journal of Water Resources Planning and Management. 144, 4, 04018009.

Research output: Contribution to journalArticle

2017

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

McIntyre, A. B. R., Ounit, R., Afshinnekoo, E., Prill, R. J., Hénaff, E., Alexander, N., Minot, S. S., Danko, D., Foox, J., Ahsanuddin, S., Tighe, S., Hasan, N. A., Subramanian, P., Moffat, K., Levy, S., Lonardi, S., Greenfield, N., Colwell, R. R., Rosen, G. L. & Mason, C. E., Sep 21 2017, In : Genome biology. 18, 1, 182.

Research output: Contribution to journalArticle

How walkable is Walker’s paradise?

Koschinsky, J., Talen, E., Alfonzo, M. & Lee, S., Jan 1 2017, In : Environment and Planning B: Urban Analytics and City Science. 44, 2, p. 343-363 21 p.

Research output: Contribution to journalArticle

Process profitably. Do your own color blending

SCHEINER LL, LL., Jan 1 2017, In : Plastics Technol. 17, 7, p. 38-39 2 p.

Research output: Contribution to journalArticle

Retrotransposons are specified as DNA replication origins in the gene-poor regions of Arabidopsis heterochromatin

Vergara, Z., Sequeira-Mendes, J., Morata, J., Peiró, R., Hénaff, E., Costas, C., Casacuberta, J. M. & Gutierrez, C., Jan 1 2017, In : Nucleic acids research. 45, 14, p. 8358-8368 11 p.

Research output: Contribution to journalArticle

Topological order and emergence

Bain, J., Jan 1 2017, In : Philosophica. 92, 2, p. 77-112 36 p.

Research output: Contribution to journalArticle

2016

Airborne particulate matter in two multi-family green buildings: Concentrations and effect of ventilation and occupant behavior

Patton, A. P., Calderon, L., Xiong, Y., Wang, Z., Senick, J., Allacci, M. S., Plotnik, D., Wener, R., Andrews, C. J., Krogmann, U. & Mainelis, G., Jan 20 2016, In : International journal of environmental research and public health. 13, 1

Research output: Contribution to journalArticle

Comparison of real-time instruments and gravimetric method when measuring particulate matter in a residential building

Wang, Z., Calderón, L., Patton, A. P., Sorensen Allacci, M. A., Senick, J., Wener, R., Andrews, C. J. & Mainelis, G., Nov 1 2016, In : Journal of the Air and Waste Management Association. 66, 11, p. 1109-1120 12 p.

Research output: Contribution to journalArticle

Distinguishing between green building occupants reasoned and unplanned behaviours

Hewitt, E. L., Andrews, C. J., Senick, J. A., Wener, R. E., Krogmann, U. & Sorensen Allacci, M., Feb 17 2016, In : Building Research and Information. 44, 2, p. 119-134 16 p.

Research output: Contribution to journalArticle

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Zook, J. M., Catoe, D., McDaniel, J., Vang, L., Spies, N., Sidow, A., Weng, Z., Liu, Y., Mason, C. E., Alexander, N., Henaff, E., McIntyre, A. B. R., Chandramohan, D., Chen, F., Jaeger, E., Moshrefi, A., Pham, K., Stedman, W., Liang, T., Saghbini, M. & 33 others, Dzakula, Z., Hastie, A., Cao, H., Deikus, G., Schadt, E., Sebra, R., Bashir, A., Truty, R. M., Chang, C. C., Gulbahce, N., Zhao, K., Ghosh, S., Hyland, F., Fu, Y., Chaisson, M., Xiao, C., Trow, J., Sherry, S. T., Zaranek, A. W., Ball, M., Bobe, J., Estep, P., Church, G. M., Marks, P., Kyriazopoulou-Panagiotopoulou, S., Zheng, G. X. Y., Schnall-Levin, M., Ordonez, H. S., Mudivarti, P. A., Giorda, K., Sheng, Y., Rypdal, K. B. & Salit, M., Jun 7 2016, In : Scientific Data. 3, 160025.

Research output: Contribution to journalArticle

InVEST: Intelligent visual email search and triage

Koven, J., Bertini, E., Dubois, L. & Memon, N., Aug 7 2016, In : Digital Investigation. 18, p. S138-S148

Research output: Contribution to journalArticle

Investigating the implications of 3D printing in special education

Buehler, E., Comrie, N., Hofmann, M., McDonald, S. & Hurst, A., Mar 2016, In : ACM Transactions on Accessible Computing. 8, 3, 2870640.

Research output: Contribution to journalArticle

Walk score, transportation mode choice, and walking among french adults: A GPS, accelerometer, and mobility survey study

Duncan, D. T., Méline, J., Kestens, Y., Day, K., Elbel, B., Trasande, L. & Chaix, B., Jun 20 2016, In : International journal of environmental research and public health. 13, 6, p. 1-14 14 p.

Research output: Contribution to journalArticle

2015

Assessment of web-based interactive game system methodology for dissemination and diffusion to improve firefighter safety and wellness

Wener, R., Panindre, P., Kumar, S., Feygina, I., Smith, E., Dalton, J. & Seal, U., Feb 2015, In : Fire Safety Journal. 72, p. 59-67 9 p.

Research output: Contribution to journalArticle

Determining neutrino oscillation parameters from atmospheric muon neutrino disappearance with three years of IceCube DeepCore data

Aartsen, M. G., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., Ahrens, M., Altmann, D., Anderson, T., Arguelles, C., Arlen, T. C., Auffenberg, J., Bai, X., Barwick, S. W., Baum, V., Bay, R., Beatty, J. J., Tjus, J. B., Becker, K. -H., BenZvi, S., Berghaus, P. & 285 others, Berley, D., Bernardini, E., Bernhard, A., Besson, D. Z., Binder, G., Bindig, D., Bissok, M., Blaufuss, E., Blumenthal, J., Boersma, D. J., Bohm, C., Bos, F., Bose, D., Boeser, S., Botner, O., Brayeur, L., Bretz, H. -P., Brown, A. M., Brunner, J., Buzinsky, N., Casey, J., Casier, M., Cheung, E., Chirkin, D., Christov, A., Christy, B., Clark, K., Classen, L., Clevermann, F., Coenders, S., Cowen, D. F., Silva, A. H. C., Daughhetee, J., Davis, J. C., Day, M., de Andre, J. P. A. M., De Clercq, C., De Ridder, S., Desiati, P., de Vries, K. D., de With, M., De Young, T., Diaz-Velez, J. C., Dunkman, M., Eagan, R., Eberhardt, B., Eichmann, B., Eisch, J., Euler, S., Evenson, P. A., Fadiran, O., Fazely, A. R., Fedynitch, A., Feintzeig, J., Felde, J., Feusels, T., Filimonov, K., Finley, C., Fischer-Wasels, T., Flis, S., Franckowiak, A., Frantzen, K., Fuchs, T., Gaisser, T. K., Gaior, R., Gallagher, J., Gerhardt, L., Gier, D., Gladstone, L., Gluesenkamp, T., Goldschmidt, A., Golup, G., Gonzalez, J. G., Goodman, J. A., Gora, D., Grant, D., Gretskov, P., Groh, J. C., Gross, A., Ha, C., Haack, C., Ismail, A. H., Hallen, P., Hallgren, A., Halzen, F., Hanson, K., Hebecker, D., Heereman, D., Heinen, D., Helbing, K., Hellauer, R., Hellwig, D., Hickford, S., Hill, G. C., Hoffman, K. D., Hoffmann, R., Homeier, A., Hoshina, K., Huang, F., Huelsnitz, W., Hulth, P. O., Hultqvist, K., Hussain, S., Ishihara, A., Jacobi, E., Jacobsen, J., Jagielski, K., Japaridze, G. S., Jero, K., Jlelati, O., Jurkovic, M., Kaminsky, B., Kappes, A., Karg, T., Karle, A., Kauer, M., Keivani, A., Kelley, J. L., Kheirandish, A., Kiryluk, J., Klaes, J., Klein, S. R., Koehne, J. -H., Kohnen, G., Kolanoski, H., Koob, A., Koepke, L., Kopper, C., Kopper, S., Koskinen, D. J., Kowalski, M., Kriesten, A., Krings, K., Kroll, G., Kroll, M., Kunnen, J., Kurahashi, N., Kuwabara, T., Labare, M., Lanfranchi, J. L., Larsen, D. T., Larson, M. J., Lesiak-Bzdak, M., Leuermann, M., Luenemann, J., Madsen, J., Maggi, G., Maruyama, R., Mase, K., Matis, H. S., Maunu, R., McNally, F., Meagher, K., Medici, M., Meli, A., Meures, T., Miarecki, S., Middell, E., Middlemas, E., Milke, N., Miller, J., Mohrmann, L., Montaruli, T., Morse, R., Nahnhauer, R., Naumann, U., Niederhausen, H., Nowicki, S. C., Nygren, D. R., Obertacke, A., Odrowski, S., Olivas, A., Omairat, A., O'Murchadha, A., Palczewski, T., Paul, L., Penek, O., Pepper, J. A., de los Heros, C. P., Pfendner, C., Pieloth, D., Pinat, E., Posselt, J., Price, P. B., Przybylski, G. T., Puetz, J., Quinnan, M., Raedel, L., Rameez, M., Rawlins, K., Redl, P., Rees, I., Reimann, R., Relich, M., Resconi, E., Rhode, W., Richman, M., Riedel, B., Robertson, S., Rodrigues, J. P., Rongen, M., Rott, C., Ruhe, T., Ruzybayev, B., Ryckbosch, D., Saba, S. M., Sander, H. -G., Sandroos, J., Santander, M., Sarkar, S., Schatto, K., Scheriau, F., Schmidt, T., Schmitz, M., Schoenen, S., Schoeneberg, S., Schoenwald, A., Schukraft, A., Schulte, L., Schulz, O., Seckel, D., Sestayo, Y., Seunarine, S., Shanidze, R., Smith, M. W. E., Soldin, D., Spiczak, G. M., Spiering, C., Stamatikos, M., Stanev, T., Stanisha, N. A., Stasik, A., Stezelberger, T., Stokstad, R. G., Stoessl, A., Strahler, E. A., Strom, R., Strotjohann, N. L., Sullivan, G. W., Taavola, H., Taboada, I., Tamburro, A., Tepe, A., Ter-Antonyan, S., Terliuk, A., Tesic, G., Tilav, S., Toale, P. A., Tobin, M. N., Tosi, D., Tselengidou, M., Unger, E., Usner, M., Vallecorsa, S., van Eijndhoven, N., Vandenbroucke, J., van Santen, J., Vehring, M., Voge, M., Vraeghe, M., Walck, C., Wallraff, M., Weaver, C., Wellons, M., Wendt, C., Westerhoff, S., Whelan, B. J., Whitehorn, N., Wichary, C., Wiebe, K., Wiebusch, C. H., Williams, D. R., Wissing, H., Wolf, M., Wood, T. R., Woschnagg, K., Xu, D. L., Xu, X. W., Yanez, J. P., Yodh, G., Yoshida, S., Zarzhitsky, P., Ziemann, J., Zierke, S. & Zoll, M., Apr 7 2015, In : Physical Review D - Particles, Fields, Gravitation and Cosmology. 91, 7

Research output: Contribution to journalArticle

Genomic DNA transposition induced by human PGBD5

Henssen, A. G., Henaff, E., Jiang, E., Eisenberg, A. R., Carson, J. R., Villasante, C. M., Ray, M., Still, E., Burns, M., Gandara, J., Feschotte, C., Mason, C. E. & Kentsis, A., Sep 25 2015, In : eLife. 4, September, e10565.

Research output: Contribution to journalArticle

Jitterbug: Somatic and germline transposon insertion detection at single-nucleotide resolution

Hénaff, E., Zapata, L., Casacuberta, J. M. & Ossowski, S., Oct 12 2015, In : BMC Genomics. 16, 1, 768.

Research output: Contribution to journalArticle

Making the Economic Case for More Walkability

Alfonzo, M., May 15 2015, Urban Land Magazine.

Research output: Contribution to specialist publicationArticle

Transposon insertions, structural variations, and SNPs contribute to the evolution of the melon genome

Sanseverino, W., Hénaff, E., Vives, C., Pinosio, S., Burgos-Paz, W., Morgante, M., Ramos-Onsins, S. E., Garcia-Mas, J. & Casacuberta, J. M., Oct 2015, In : Molecular Biology and Evolution. 32, 10, p. 2760-2774 15 p.

Research output: Contribution to journalArticle

2014
Open Access

Collaboratively designing assistive technology

Kane, S. K., Hurst, A., Buehler, E., Carrington, P. A. & Williams, M. A., Mar 1 2014, Interactions, 21, 2, p. 78-81 4 p.

Research output: Contribution to specialist publicationArticle

Does Bus Rapid Transit promote walking? An examination of New York City's Select Bus Service

Day, K., Loh, L., Ruff, R. R., Rosenblum, R., Fischer, S. & Lee, K. K., Nov 1 2014, In : Journal of Physical Activity and Health. 11, 8, p. 1512-1516 5 p., 20120382.

Research output: Contribution to journalArticle

Extensive amplification of the E2F transcription factor binding sites by transposons during evolution of Brassica species

Hénaff, E., Vives, C., Desvoyes, B., Chaurasia, A., Payet, J., Gutierrez, C. & Casacuberta, J. M., Mar 2014, In : Plant Journal. 77, 6, p. 852-862 11 p.

Research output: Contribution to journalArticle

Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis

Yang, L., Koo, D. H., Li, D., Zhang, T., Jiang, J., Luan, F., Renner, S. S., Hénaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D. A., Simon, P. W., Chen, J. & Weng, Y., Jan 1 2014, In : Plant Journal. 77, 1, p. 16-30 15 p.

Research output: Contribution to journalArticle

Walking, obesity and urban design in Chinese neighborhoods

Alfonzo, M., Guo, Z., Lin, L. & Day, K., Dec 1 2014, In : Preventive Medicine. 69, S, p. S79-S85

Research output: Contribution to journalArticle

2013

Category-theoretic structure and radical ontic structural realism

Bain, J., Jan 1 2013, In : Synthese. 190, 9, p. 1621-1635 15 p.

Research output: Contribution to journalArticle

CPT Invariance, the Spin-Statistics Connection, and the Ontology of Relativistic Quantum Field Theories

Bain, J., Aug 1 2013, In : Erkenntnis. 78, 4, p. 797-821 25 p.

Research output: Contribution to journalArticle

Designing tall buildings to promote physical activity in China

Day, K., Alfonzo, M., Guo, Z. & Lin, L., Dec 1 2013, In : CTBUH Journal. 4, p. 18-25 8 p.

Research output: Contribution to journalArticle

Distinguishing users by pointing performance in laboratory and real-world tasks

Hurst, A., Hudson, S. E., Mankoff, J. & Trewin, S., Oct 1 2013, In : ACM Transactions on Accessible Computing. 5, 2, 5.

Research output: Contribution to journalArticle

Distinguishing Users by Pointing Performance in Laboratory and Real-World Tasks

Hurst, A., Hudson, S. E., Mankoff, J. & Trewin, S., Jan 1 2013, In : ACM Transactions on Accessible Computing. 5, 2, p. 1-27 27 p.

Research output: Contribution to journalArticle

Emergence in effective field theories

Bain, J., Oct 1 2013, In : European Journal for Philosophy of Science. 3, 3, p. 257-273 17 p.

Research output: Contribution to journalArticle

Overweight, Obesity, And inactivity and urban design in rapidly growing Chinese cities

Day, K., Alfonzo, M., Chen, Y., Guo, Z. & Lee, K. K., May 2013, In : Health and Place. 21, p. 29-38 10 p.

Research output: Contribution to journalArticle

2012

Evidence­-based design & correctional architecture

Wener, R., Jan 2012, In : AIAA Journal.

Research output: Contribution to journalArticle

MITEs, miniature elements with a major role in plant genome evolution

Guermonprez, H., Hénaff, E., Cifuentes, M. & Casacuberta, J. M., Dec 1 2012, In : Topics in Current Genetics. 24, p. 113-124 12 p.

Research output: Contribution to journalArticle

Personalized dynamic accessibility

Gajos, K. Z., Hurst, A. & Findlater, L., Mar 1 2012, Interactions, 19, 2, p. 69-71 3 p.

Research output: Contribution to specialist publicationArticle

Promoting routine stair use: Evaluating the impact of a stair prompt across buildings

Lee, K. K., Perry, A. S., Wolf, S. A., Agarwal, R., Rosenblum, R., Fischer, S., Grimshaw, V. E., Wener, R. E. & Silver, L. D., Feb 1 2012, In : American journal of preventive medicine. 42, 2, p. 136-141 6 p.

Research output: Contribution to journalArticle

The genome of melon (Cucumis melo L.)

Garcia-Mas, J., Benjak, A., Sanseverino, W., Bourgeois, M., Mir, G., Gonźalez, V. M., Heńaff, E., Cam̂ara, F., Cozzuto, L., Lowy, E., Alioto, T., Capella-Gutieŕrez, S., Blancae, J., Cañizares, J., Ziarsolo, P., Gonzalez-Ibeas, D., Rodriǵuez-Moreno, L., Droege, M., Du, L., Alvarez-Tejado, M. & 15 others, Lorente-Galdos, B., Meleć, M., Yang, L., Weng, Y., Navarro, A., Marques-Bonet, T., Aranda, M. A., Nuez, F., Picó, B., Gabaldoń, T., Roma, G., Guigoć, R., Casacuberta, J. M., Aruś, P. & Puigdomeǹech, P., Jul 17 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 29, p. 11872-11877 6 p.

Research output: Contribution to journalArticle

The Tnt1 retrotransposon escapes silencing in tobacco, its natural host

Hernández-Pinzón, I., Cifuentes, M., Hénaff, E., Santiago, N., Espinás, M. L. & Casacuberta, J. M., Mar 30 2012, In : PloS one. 7, 3, e33816.

Research output: Contribution to journalArticle

The US in fifty dates

Dubois, R., Feb 2012, National Geographic.

Research output: Contribution to specialist publicationArticle

2011

Comparing stress of car and train commuters

Wener, R. E. & Evans, G. W., Mar 2011, In : Transportation Research Part F: Traffic Psychology and Behaviour. 14, 2, p. 111-116 6 p.

Research output: Contribution to journalArticle

Designing buildings for real occupants: An agent-based approach

Andrews, C. J., Yi, D., Krogmann, U., Senick, J. A. & Wener, R. E., Nov 1 2011, In : IEEE Transactions on Systems, Man, and Cybernetics Part A:Systems and Humans. 41, 6, p. 1077-1091 15 p., 5740371.

Research output: Contribution to journalArticle