Edo Kussell

Murugan, A., Husain, K., Rust, M. J., Hepler, C., Bass, J., Pietsch, J. M. J., Swain, P. S., Jena, S. G., Toettcher, J. E., Chakraborty, A. K., Sprenger, K. G., Mora, T., Walczak, A. M., Rivoire, O., Wang, S., Wood, K. B., Skanata, A., Kussell, E., Ranganathan, R. & Shih, H. Y. & 1 others, Goldenfeld, N., Jul 2021, In: Physical Biology. 18, 4, 041502.

Research output: Contribution to journal › Article › peer-review

Open Access

2020

Cell Cycle Heritability and Localization Phase Transition in Growing Populations

Nozoe, T. & Kussell, E., Dec 29 2020, In: Physical Review Letters. 125, 26, 268103.

Research output: Contribution to journal › Article › peer-review

Open Access

Origin of exponential growth in nonlinear reaction networks

Lin, W. H., Kussell, E., Young, L. S. & Jacobs-Wagner, C., Nov 10 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 45, p. 27795-27804 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2019

Inferring bacterial recombination rates from large-scale sequencing datasets

Lin, M. & Kussell, E., Feb 1 2019, In: Nature methods. 16, 2, p. 199-204 6 p.

Research output: Contribution to journal › Article › peer-review

2017

Correlated mutations and homologous recombination within bacterial populations

Lin, M. & Kussell, E., Feb 2017, In: Genetics. 205, 2, p. 891-917 27 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data

Nozoe, T., Kussell, E. & Wakamoto, Y., Mar 2017, In: PLoS genetics. 13, 3, e1006653.

Research output: Contribution to journal › Article › peer-review

Open Access

The impact of bottlenecks on microbial survival, adaptation, and phenotypic switching in host–pathogen interactions

Moxon, R. & Kussell, E., Dec 2017, In: Evolution. 71, 12, p. 2803-2816 14 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2016

Bacterial autoimmunity due to a restriction-modification system

Pleška, M., Qian, L., Okura, R., Bergmiller, T., Wakamoto, Y., Kussell, E. & Guet, C. C., Feb 8 2016, In: Current Biology. 26, 3, p. 404-409 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Complex Interplay of Physiology and Selection in the Emergence of Antibiotic Resistance

Lin, W. H. & Kussell, E., 2016, In: Current Biology. 26, 11, p. 1486-1493 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Evolutionary Phase Transitions in Random Environments

Skanata, A. & Kussell, E., Jul 15 2016, In: Physical Review Letters. 117, 3, 038104.

Research output: Contribution to journal › Article › peer-review

Open Access

Genome-wide motif statistics are shaped by DNA binding proteins over evolutionary time scales

Qian, L. & Kussell, E., 2016, In: Physical Review X. 6, 4, 041009.

Research output: Contribution to journal › Article › peer-review

Open Access

Noise-driven growth rate gain in clonal cellular populations

Hashimoto, M., Nozoe, T., Nakaoka, H., Okura, R., Akiyoshi, S., Kaneko, K., Kussell, E. & Wakamoto, Y., Mar 22 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 12, p. 3151-3156 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2015

Populations adapt to fluctuating selection using derived and ancestral allelic diversity

Lin, W. H., Rocco, M. J., Bertozzi-Villa, A. & Kussell, E., Jun 1 2015, In: Evolution. 69, 6, p. 1448-1460 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Quantifying selective pressures driving bacterial evolution using lineage analysis

Lambert, G. & Kussell, E., 2015, In: Phys Rev X. 5, 1

Research output: Contribution to journal › Article › peer-review

2014

Memory and Fitness Optimization of Bacteria under Fluctuating Environments

Lambert, G. & Kussel, E., Sep 1 2014, In: PLoS genetics. 10, 9

Research output: Contribution to journal › Article › peer-review

Non-equilibrium physics and evolution - Adaptation, extinction, and ecology: A Key Issues review

Kussell, E. & Vucelja, M., Oct 1 2014, In: Reports on Progress in Physics. 77, 10, 102602.

Research output: Contribution to journal › Article › peer-review

2013

Evolution in microbes

Kussell, E., May 2013, In: Annual Review of Biophysics. 42, 1, p. 493-514 22 p.

Research output: Contribution to journal › Review article › peer-review

2012

Evolutionary dynamics of restriction site avoidance

Qian, L. & Kussell, E., Apr 13 2012, In: Physical Review Letters. 108, 15, 158105.

Research output: Contribution to journal › Article › peer-review

Evolutionary pressures on simple sequence repeats in prokaryotic coding regions

Lin, W. H. & Kussell, E., Mar 2012, In: Nucleic acids research. 40, 6, p. 2399-2413 15 p.

Research output: Contribution to journal › Article › peer-review

Optimal lineage principle for age-structured populations

Wakamoto, Y., Grosberg, A. Y. & Kussell, E., Jan 2012, In: Evolution. 66, 1, p. 115-134 20 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Stochastic de-repression of rhodopsins in single photoreceptors of the fly retina

Sood, P., Johnston, R. J. & Kussell, E., Feb 2012, In: PLoS computational biology. 8, 2, e1002357.

Research output: Contribution to journal › Article › peer-review

2011

Interlocked feedforward loops control cell-type-specific rhodopsin expression in the drosophila eye

Johnston, R. J., Otake, Y., Sood, P., Vogt, N., Behnia, R., Vasiliauskas, D., McDonald, E., Xie, B., Koenig, S., Wolf, R., Cook, T., Gebelein, B., Kussell, E., Nakagoshi, H. & Desplan, C., Jun 10 2011, In: Cell. 145, 6, p. 956-968 13 p.

Research output: Contribution to journal › Article › peer-review

Measuring cell identity in noisy biological systems

Birnbaum, K. D. & Kussell, E., Nov 2011, In: Nucleic acids research. 39, 21, p. 9093-9107 15 p.

Research output: Contribution to journal › Article › peer-review

2010

Individual histories and selection in heterogeneous populations

Leibler, S. & Kussell, E., Jul 20 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 29, p. 13183-13188 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2006

Polymer-population mapping and localization in the space of phenotypes

Kussell, E., Leibler, S. & Grosberg, A., 2006, In: Physical Review Letters. 97, 6, 068101.

Research output: Contribution to journal › Article › peer-review

2005

Bacterial persistence: A model of survival in changing environments

Kussell, E., Kishony, R., Balaban, N. Q. & Leibler, S., Apr 2005, In: Genetics. 169, 4, p. 1807-1814 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Phenotypic diversity, population growth, and information in fluctuating environments

Kussell, E. & Leibler, S., Sep 23 2005, In: Science. 309, 5743, p. 2075-2078 4 p.

Research output: Contribution to journal › Article › peer-review

The designability hypothesis and protein evolution

Kussell, E., Feb 2005, In: Protein and Peptide Letters. 12, 2, p. 111-116 6 p.

Research output: Contribution to journal › Review article › peer-review

2003

Side-chain dynamics and protein folding

Kussell, E., Shimada, J. & Shakhnovich, E. I., Aug 1 2003, In: Proteins: Structure, Function and Genetics. 52, 2, p. 303-321 19 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2002

A structure-based method for derivation of all-atom potentials for protein folding

Kussell, E., Shimada, J. & Shakhnovich, E. I., Apr 16 2002, In: Proceedings of the National Academy of Sciences of the United States of America. 99, 8, p. 5343-5348 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Glassy Dynamics of Side-Chain Ordering in a Simple Model of Protein Folding

Kussell, E. & Shakhnovich, E. I., 2002, In: Physical Review Letters. 89, 16

Research output: Contribution to journal › Article › peer-review

2001

Excluded volume in protein side-chain packing

Kussell, E., Shimada, J. & Shakhnovich, E. I., Aug 3 2001, In: Journal of Molecular Biology. 311, 1, p. 183-193 11 p.

Research output: Contribution to journal › Article › peer-review

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

Shimada, J., Kussell, E. L. & Shakhnovich, E. I., Apr 20 2001, In: Journal of Molecular Biology. 308, 1, p. 79-95 17 p.

Research output: Contribution to journal › Article › peer-review

1999

Analytical approach to the protein design problem

Kussell, E. L. & Shakhnovich, E. I., Jan 1 1999, In: Physical Review Letters. 83, 21, p. 4437-4440 4 p.

Research output: Contribution to journal › Article › peer-review

1997

Recovery of protein structure from contact maps

Vendruscolo, M., Kussell, E. & Domany, E., 1997, In: Folding and Design. 2, 5, p. 295-306 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Edo Kussell

Research output

Search results