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Elodie Ghedin

Professor of Biology and Public Health

    1993 …2020

    Research output per year

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    Research Output

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    Article
    2020

    A rapid and label-free platform for virus capture and identification from clinical samples

    Yeh, Y. T., Gulino, K., Zhang, Y. H., Sabestien, A., Chou, T. W., Zhou, B., Lin, Z., Albert, I., Lu, H., Swaminathan, V., Ghedin, E. & Terrones, M., Jan 14 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 2, p. 895-901 7 p.

    Research output: Contribution to journalArticle

    Open Access

    Cell-to-cell variation in defective virus expression and effects on host responses during influenza virus infection

    Wang, C., Forst, C. V., Chou, T. W., Geber, A., Wang, M., Hamou, W., Smith, M., Sebra, R., Zhang, B., Zhou, B. & Ghedin, E., Jan 1 2020, In : mBio. 11, 1, e02880-19.

    Research output: Contribution to journalArticle

    Open Access

    Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection

    Zhang, L., Forst, C. V., Gordon, A., Gussin, G., Geber, A. B., Fernandez, P. J., Ding, T., Lashua, L., Wang, M., Balmaseda, A., Bonneau, R., Zhang, B. & Ghedin, E., Mar 17 2020, In : Microbiome. 8, 1, 39.

    Research output: Contribution to journalArticle

    Open Access

    Sex chromosome evolution in parasitic nematodes of humans

    Foster, J. M., Grote, A., Mattick, J., Tracey, A., Tsai, Y. C., Chung, M., Cotton, J. A., Clark, T. A., Geber, A., Holroyd, N., Korlach, J., Li, Y., Libro, S., Lustigman, S., Michalski, M. L., Paulini, M., Rogers, M. B., Teigen, L., Twaddle, A., Welch, L. & 3 others, Berriman, M., Dunning Hotopp, J. C. & Ghedin, E., Dec 1 2020, In : Nature communications. 11, 1, 1964.

    Research output: Contribution to journalArticle

    Open Access
    2019

    Age-Related Pathology Associated with H1N1 A/California/07/2009 Influenza Virus Infection

    Bissel, S. J., Carter, C. E., Wang, G., Johnson, S. K., Lashua, L. P., Kelvin, A. A., Wiley, C. A., Ghedin, E. & Ross, T. M., Dec 2019, In : American Journal of Pathology. 189, 12, p. 2389-2399 11 p.

    Research output: Contribution to journalArticle

    Development and characterization of a reverse-genetics system for influenza D virus

    Yu, J., Liu, R., Zhou, B., Chou, T. W., Ghedin, E., Sheng, Z., Gao, R., Zhai, S. L., Wang, D. & Lia, F., 2019, In : Journal of virology. 93, 21, e01186-19.

    Research output: Contribution to journalArticle

    Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

    Edwards, R. A., Vega, A. A., Norman, H. M., Ohaeri, M., Levi, K., Dinsdale, E. A., Cinek, O., Aziz, R. K., McNair, K., Barr, J. J., Bibby, K., Brouns, S. J. J., Cazares, A., de Jonge, P. A., Desnues, C., Díaz Muñoz, S. L., Fineran, P. C., Kurilshikov, A., Lavigne, R., Mazankova, K. & 97 others, McCarthy, D. T., Nobrega, F. L., Reyes Muñoz, A., Tapia, G., Trefault, N., Tyakht, A. V., Vinuesa, P., Wagemans, J., Zhernakova, A., Aarestrup, F. M., Ahmadov, G., Alassaf, A., Anton, J., Asangba, A., Billings, E. K., Cantu, V. A., Carlton, J. M., Cazares, D., Cho, G. S., Condeff, T., Cortés, P., Cranfield, M., Cuevas, D. A., De la Iglesia, R., Decewicz, P., Doane, M. P., Dominy, N. J., Dziewit, L., Elwasila, B. M., Eren, A. M., Franz, C., Fu, J., Garcia-Aljaro, C., Ghedin, E., Gulino, K. M., Haggerty, J. M., Head, S. R., Hendriksen, R. S., Hill, C., Hyöty, H., Ilina, E. N., Irwin, M. T., Jeffries, T. C., Jofre, J., Junge, R. E., Kelley, S. T., Khan Mirzaei, M., Kowalewski, M., Kumaresan, D., Leigh, S. R., Lipson, D., Lisitsyna, E. S., Llagostera, M., Maritz, J. M., Marr, L. C., McCann, A., Molshanski-Mor, S., Monteiro, S., Moreira-Grez, B., Morris, M., Mugisha, L., Muniesa, M., Neve, H., Nguyen, N. P., Nigro, O. D., Nilsson, A. S., O’Connell, T., Odeh, R., Oliver, A., Piuri, M., Prussin, A. J., Qimron, U., Quan, Z. X., Rainetova, P., Ramírez-Rojas, A., Raya, R., Reasor, K., Rice, G. A. O., Rossi, A., Santos, R., Shimashita, J., Stachler, E. N., Stene, L. C., Strain, R., Stumpf, R., Torres, P. J., Twaddle, A., Ugochi Ibekwe, M. A., Villagra, N., Wandro, S., White, B., Whiteley, A., Whiteson, K. L., Wijmenga, C., Zambrano, M. M., Zschach, H. & Dutilh, B. E., Oct 1 2019, In : Nature Microbiology. 4, 10, p. 1727-1736 10 p.

    Research output: Contribution to journalArticle

    Microbial composition of the human nasopharynx varies according to influenza virus type and vaccination status

    Ding, T., Song, T., Zhou, B., Geber, A., Ma, Y., Zhang, L., Volk, M., Kapadia, S. N., Jenkins, S. G., Salvatore, M. & Ghedin, E., Jul 1 2019, In : mBio. 10, 4, e01296-19.

    Research output: Contribution to journalArticle

    Open Access

    Pyruvate produced by Brugia spp. via glycolysis is essential for maintaining the mutualistic association between the parasite and its endosymbiont, Wolbachia

    Voronin, D., Schnall, E., Grote, A., Jawahar, S., Ali, W., Unnasch, T. R., Ghedin, E. & Lustigman, S., 2019, In : PLoS Pathogens. 15, 9, e1008085.

    Research output: Contribution to journalArticle

    Open Access

    Taxonomy of the order Mononegavirales: second update 2018

    Maes, P., Amarasinghe, G. K., Ayllón, M. A., Basler, C. F., Bavari, S., Blasdell, K. R., Briese, T., Brown, P. A., Bukreyev, A., Balkema-Buschmann, A., Buchholz, U. J., Chandran, K., Crozier, I., de Swart, R. L., Dietzgen, R. G., Dolnik, O., Domier, L. L., Drexler, J. F., Dürrwald, R., Dundon, W. G. & 57 others, Duprex, W. P., Dye, J. M., Easton, A. J., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freitas-Astúa, J., Ghedin, E., Griffiths, A., Hewson, R., Horie, M., Hurwitz, J. L., Hyndman, T. H., Jiāng, D., Kobinger, G. P., Kondō, H., Kurath, G., Kuzmin, I. V., Lamb, R. A., Lee, B., Leroy, E. M., Lǐ, J., Marzano, S. Y. L., Mühlberger, E., Netesov, S. V., Nowotny, N., Palacios, G., Pályi, B., Pawęska, J. T., Payne, S. L., Rima, B. K., Rota, P., Rubbenstroth, D., Simmonds, P., Smither, S. J., Song, Q., Song, T., Spann, K., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., van den Hoogen, B., Vasilakis, N., Wahl, V., Walker, P. J., Wang, D., Wang, L. F., Whitfield, A. E., Williams, J. V., Yè, G., Zerbini, F. M., Zhang, Y. Z. & Kuhn, J. H., Apr 3 2019, In : Archives of Virology. 164, 4, p. 1233-1244 12 p.

    Research output: Contribution to journalArticle

    2018

    Comparison of the nasopharynx microbiome between influenza and non-influenza cases of severe acute respiratory infections: A pilot study

    Borges, L. G. D. A., Giongo, A., Pereira, L. D. M., Trindade, F. J., Gregianini, T. S., Campos, F. S., Ghedin, E. & da Veiga, A. B. G., Jun 1 2018, In : Health Science Reports. 1, 6, e47.

    Research output: Contribution to journalArticle

    Open Access

    Fungi stabilize connectivity in the lung and skin microbial ecosystems

    Tipton, L., Müller, C. L., Kurtz, Z. D., Huang, L., Kleerup, E., Morris, A., Bonneau, R. & Ghedin, E., 2018, In : Microbiome. 6, 1, 12.

    Research output: Contribution to journalArticle

    Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model

    Tipton, L., Cuenco, K. T., Huang, L., Greenblatt, R. M., Kleerup, E., Sciurba, F., Duncan, S. R., Donahoe, M. P., Morris, A. & Ghedin, E., Jun 15 2018, In : BioData Mining. 11, 1, 12.

    Research output: Contribution to journalArticle

    Profiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure

    Cadena, A. M., Ma, Y., Ding, T., Bryant, M., Maiello, P., Geber, A., Lin, P. L., Flynn, J. L. & Ghedin, E., Oct 9 2018, In : Microbiome. 6, 1, 180.

    Research output: Contribution to journalArticle

    Taxonomy of the order Mononegavirales: update 2018

    Amarasinghe, G. K., Aréchiga Ceballos, N. G., Banyard, A. C., Basler, C. F., Bavari, S., Bennett, A. J., Blasdell, K. R., Briese, T., Bukreyev, A., Caì, Y., Calisher, C. H., Campos Lawson, C., Chandran, K., Chapman, C. A., Chiu, C. Y., Choi, K. S., Collins, P. L., Dietzgen, R. G., Dolja, V. V., Dolnik, O. & 71 others, Domier, L. L., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Echevarría, J. E., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freuling, C. M., Ghedin, E., Goldberg, T. L., Hewson, R., Horie, M., Hyndman, T. H., Jiāng, D., Kityo, R., Kobinger, G. P., Kondō, H., Koonin, E. V., Krupovic, M., Kurath, G., Lamb, R. A., Lee, B., Leroy, E. M., Maes, P., Maisner, A., Marston, D. A., Mor, S. K., Müller, T., Mühlberger, E., Ramírez, V. M. N., Netesov, S. V., Ng, T. F. F., Nowotny, N., Palacios, G., Patterson, J. L., Pawęska, J. T., Payne, S. L., Prieto, K., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Siddell, S., Smither, S. J., Song, Q., Song, T., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Thomazelli, L. M., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Vázquez-Morón, S., Verdugo, C., Volchkov, V. E., Wahl, V., Walker, P. J., Wang, D., Wang, L. F., Wellehan, J. F. X., Wiley, M. R., Whitfield, A. E., Wolf, Y. I., Yè, G., Zhāng, Y. Z. & Kuhn, J. H., Aug 1 2018, In : Archives of Virology. 163, 8, p. 2283-2294 12 p.

    Research output: Contribution to journalArticle

    Tropheryma whipplei colonization in HIVinfected individuals is not associated with lung function or inflammation

    Qin, S., Clausen, E., Nouraie, S. M., Kingsley, L., McMahon, D., Kleerup, E., Huang, L., Ghedin, E., Greenblatt, R. M. & Morris, A., Oct 2018, In : PloS one. 13, 10, e0205065.

    Research output: Contribution to journalArticle

    2017

    Characterization of five unclassified orthobunyaviruses (Bunyaviridae) from Africa and the Americas

    Rogers, M. B., Gulino, K. M., Tesh, R. B., Cui, L., Fitch, A., Unnasch, T. R., Popov, V. L., Travassos da Rosa, A. P. A., Guzman, H., Carrera, J. P., Vasilakis, N. & Ghedin, E., Sep 2017, In : Journal of General Virology. 98, 9, p. 2258-2266 9 p., 000899.

    Research output: Contribution to journalArticle

    Defining Brugia malayi and Wolbachia symbiosis by stage-specific dual RNA-seq

    Grote, A., Voronin, D., Ding, T., Twaddle, A., Unnasch, T. R., Lustigman, S. & Ghedin, E., Mar 30 2017, In : PLoS neglected tropical diseases. 11, 3, e0005357.

    Research output: Contribution to journalArticle

    Evolution and cryo-electron microscopy capsid structure of a north american bat adenovirus and its relationship to other mastadenoviruses

    Hackenbrack, N., Rogers, M. B., Ashley, R. E., Keel, M. K., Kubiski, S. V., Bryan, J. A., Ghedin, E., Holmes, E. C., Hafenstein, S. L. & Allison, A. B., 2017, In : Journal of virology. 91, 2, e01504-16.

    Research output: Contribution to journalArticle

    Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia

    Kerr, P. J., Cattadori, I. M., Rogers, M. B., Fitch, A., Geber, A., Liu, J., Sim, D. G., Boag, B., Eden, J. S., Ghedin, E., Read, A. F. & Holmes, E. C., Mar 2017, In : PLoS Pathogens. 13, 3, e1006252.

    Research output: Contribution to journalArticle

    ICTV virus taxonomy profile: Nyamiviridae

    ICTV Report Consortium, Dec 1 2017, In : Journal of General Virology. 98, 12, p. 2914-2915 2 p., 000973.

    Research output: Contribution to journalArticle

    Integrative gene network analysis identifies key signatures, intrinsic networks and host factors for influenza virus A infections

    Forst, C. V., Zhou, B., Wang, M., Chou, T. W., Mason, G., Song, W. M., Schadt, E., Ghedin, E. & Zhang, B., Dec 1 2017, In : npj Systems Biology and Applications. 3, 1, 35.

    Research output: Contribution to journalArticle

    Lessons from the genomes and transcriptomes of filarial nematodes

    Grote, A., Lustigman, S. & Ghedin, E., Jul 2017, In : Molecular and Biochemical Parasitology. 215, p. 23-29 7 p.

    Research output: Contribution to journalArticle

    Multiplex reverse transcription-PCR for simultaneous surveillance of influenza A and B viruses

    Zhou, B., Deng, Y. M., Barnes, J. R., Sessions, O. M., Chou, T. W., Wilson, M., Stark, T. J., Volk, M., Spirason, N., Halpin, R. A., Kamaraj, U. S., Ding, T., Stockwell, T. B., Salvatore, M., Ghedin, E., Barr, I. G. & Wentworth, D. E., Dec 2017, In : Journal of Clinical Microbiology. 55, 12, p. 3492-3501 10 p.

    Research output: Contribution to journalArticle

    Possibility and challenges of conversion of current virus species names to Linnaean binomials

    Postler, T. S., Clawson, A. N., Amarasinghe, G. K., Basler, C. F., Bavari, S., Benko, M., Blasdell, K. R., Briese, T., Buchmeier, M. J., Bukreyev, A., Calisher, C. H., Chandran, K., Charrel, R., Clegg, C. S., Collins, P. L., De La Torre, J. C., DeRisi, J. L., Dietzgen, R. G., Dolnik, O., Dürrwald, R. & 52 others, Dye, J. M., Easton, A. J., Emonet, S., Formenty, P., Fouchier, R. A. M., Ghedin, E., Gonzalez, J. P., Harrach, B., Hewson, R., Horie, M., Jiāng, D., Kobinger, G., Kondo, H., Kropinski, A. M., Krupovic, M., Kurath, G., Lamb, R. A., Leroy, E. M., Lukashevich, I. S., Maisner, A., Mushegian, A. R., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Peters, C. J., Radoshitzky, S. R., Rima, B. K., Romanowski, V., Rubbenstroth, D., Sabanadzovic, S., Sanfaçon, H., Salvato, M. S., Schwemmle, M., Smither, S. J., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Volchkov, V. E., Wahl-Jensen, V., Walker, P. J., Wang, L. F., Varsani, A., Whitfield, A. E., Murilo Zerbini, F. & Kuhn, J. H., May 1 2017, In : Systematic Biology. 66, 3, p. 463-473 11 p.

    Research output: Contribution to journalArticle

    Taxonomy of the order Mononegavirales: update 2017

    Amarasinghe, G. K., Bào, Y., Basler, C. F., Bavari, S., Beer, M., Bejerman, N., Blasdell, K. R., Bochnowski, A., Briese, T., Bukreyev, A., Calisher, C. H., Chandran, K., Collins, P. L., Dietzgen, R. G., Dolnik, O., Dürrwald, R., Dye, J. M., Easton, A. J., Ebihara, H., Fang, Q. & 53 others, Formenty, P., Fouchier, R. A. M., Ghedin, E., Harding, R. M., Hewson, R., Higgins, C. M., Hong, J., Horie, M., James, A. P., Jiāng, D., Kobinger, G. P., Kondo, H., Kurath, G., Lamb, R. A., Lee, B., Leroy, E. M., Li, M., Maisner, A., Mühlberger, E., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Pearson, M. N., Randall, R. E., Revill, P. A., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Smither, S. J., Song, Q., Stone, D. M., Takada, A., Terregino, C., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Volchkov, V. E., Wahl-Jensen, V., Walker, P. J., Wang, B., Wang, D., Wang, F., Wang, L. F., Werren, J. H., Whitfield, A. E., Yan, Z., Ye, G. & Kuhn, J. H., Aug 1 2017, In : Archives of Virology. 162, 8, p. 2493-2504 12 p.

    Research output: Contribution to journalArticle

    Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus

    Leonard, A. S., Weissman, D. B., Greenbaum, B., Ghedin, E. & Koelle, K., Jul 1 2017, In : Journal of virology. 91, 14, e00171-17.

    Research output: Contribution to journalArticle

    2016

    Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection

    Cribbs, S. K., Uppal, K., Li, S., Jones, D. P., Huang, L., Tipton, L., Fitch, A., Greenblatt, R. M., Kingsley, L., Guidot, D. M., Ghedin, E. & Morris, A., Dec 1 2016, In : Microbiome. 4, 1

    Research output: Contribution to journalArticle

    Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype

    Segal, L. N., Clemente, J. C., Tsay, J. J., Koralov, S. B., Keller, B. C., Wu, B. G., Li, Y., Shen, N., Ghedin, E., Morris, A., Diaz, P., Huang, L., Wikoff, W. R., Ubeda, C., Artacho, A., Rom, W. N., Sterman, D. H., Collman, R. G., Blaser, M. J. & Weiden, M. D., 2016, In : Nature Reviews Microbiology. 1, 5

    Research output: Contribution to journalArticle

    Glucose and glycogen metabolism in brugia malayi is associated with wolbachia symbiont fitness

    Voronin, D., Bachu, S., Shlossman, M., Unnasch, T. R., Ghedin, E. & Lustigman, S., Apr 2016, In : PloS one. 11, 4, e0153812.

    Research output: Contribution to journalArticle

    Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection

    Morris, A., Paulson, J. N., Talukder, H., Tipton, L., Kling, H., Cui, L., Fitch, A., Pop, M., Norris, K. A. & Ghedin, E., 2016, In : Microbiome. 4, 38.

    Research output: Contribution to journalArticle

    Quantifying influenza virus diversity and transmission in humans

    Poon, L. L. M., Song, T., Rosenfeld, R., Lin, X., Rogers, M. B., Zhou, B., Sebra, R., Halpin, R. A., Guan, Y., Twaddle, A., DePasse, J. V., Stockwell, T. B., Wentworth, D. E., Holmes, E. C., Greenbaum, B., Peiris, J. S. M., Cowling, B. J. & Ghedin, E., Feb 1 2016, In : Nature Genetics. 48, 2, p. 195-200 6 p.

    Research output: Contribution to journalArticle

    Stage-specific transcriptome and proteome analyses of the filarial parasite Onchocerca volvulus and its Wolbachia endosymbiont

    Bennuru, S., Cotton, J. A., Ribeiro, J. M. C., Grote, A., Harsha, B., Holroyd, N., Mhashilkar, A., Molina, D. M., Randall, A. Z., Shandling, A. D., Unnasch, T. R., Ghedin, E., Berriman, M., Lustigman, S. & Nutman, T. B., Jan 1 2016, In : mBio. 7, 6, e02028-16.

    Research output: Contribution to journalArticle

    Taxonomy of the order Mononegavirales: update 2016

    Afonso, C. L., Amarasinghe, G. K., Bányai, K., Bào, Y., Basler, C. F., Bavari, S., Bejerman, N., Blasdell, K. R., Briand, F. X., Briese, T., Bukreyev, A., Calisher, C. H., Chandran, K., Chéng, J., Clawson, A. N., Collins, P. L., Dietzgen, R. G., Dolnik, O., Domier, L. L., Dürrwald, R. & 63 others, Dye, J. M., Easton, A. J., Ebihara, H., Farkas, S. L., Freitas-Astúa, J., Formenty, P., Fouchier, R. A. M., Fù, Y., Ghedin, E., Goodin, M. M., Hewson, R., Horie, M., Hyndman, T. H., Jiāng, D., Kitajima, E. W., Kobinger, G. P., Kondo, H., Kurath, G., Lamb, R. A., Lenardon, S., Leroy, E. M., Li, C. X., Lin, X. D., Liú, L., Longdon, B., Marton, S., Maisner, A., Mühlberger, E., Netesov, S. V., Nowotny, N., Patterson, J. L., Payne, S. L., Paweska, J. T., Randall, R. E., Rima, B. K., Rota, P., Rubbenstroth, D., Schwemmle, M., Shi, M., Smither, S. J., Stenglein, M. D., Stone, D. M., Takada, A., Terregino, C., Tesh, R. B., Tian, J. H., Tomonaga, K., Tordo, N., Towner, J. S., Vasilakis, N., Verbeek, M., Volchkov, V. E., Wahl-Jensen, V., Walsh, J. A., Walker, P. J., Wang, D., Wang, L. F., Wetzel, T., Whitfield, A. E., Xiè, J., Yuen, K. Y., Zhang, Y. Z. & Kuhn, J. H., Aug 1 2016, In : Archives of Virology. 161, 8, p. 2351-2360 10 p.

    Research output: Contribution to journalArticle

    The genome of Onchocerca volvulus, agent of river blindness

    Cotton, J. A., Bennuru, S., Grote, A., Harsha, B., Tracey, A., Beech, R., Doyle, S. R., Dunn, M., Hotopp, J. C. D., Holroyd, N., Kikuchi, T., Lambert, O., Mhashilkar, A., Mutowo, P., Nursimulu, N., Ribeiro, J. M. C., Rogers, M. B., Stanley, E., Swapna, L. S., Tsai, I. J. & 7 others, Unnasch, T. R., Voronin, D., Parkinson, J., Nutman, T. B., Ghedin, E., Berriman, M. & Lustigman, S., Nov 21 2016, In : Nature Microbiology. 2, 16216.

    Research output: Contribution to journalArticle

    The metagenomics and metadesign of the subways and Urban biomes (MetaSUB) international consortium inaugural meeting report

    The MetaSUB International Consortium, Jan 1 2016, In : Microbiome. 4, 24.

    Research output: Contribution to journalArticle

    Open Access
    2015

    Cyclic avian mass mortality in the northeastern United States is associated with a novel orthomyxovirus

    Allison, A. B., Ballard, J. R., Tesh, R. B., Brown, J. D., Ruder, M. G., Keel, M. K., Munk, B. A., Mickley, R. M., Gibbs, S. E. J., Travassos da Rosa, A. P. A., Ellis, J. C., Ip, H. S., Shearn-Bochsler, V. I., Rogers, M. B., Ghedin, E., Holmes, E. C., Parrish, C. R. & Dwyer, C., 2015, In : Journal of virology. 89, 2, p. 1389-1403 15 p.

    Research output: Contribution to journalArticle

    Development of high-yield influenza A virus vaccine viruses

    Ping, J., Lopes, T. J. S., Nidom, C. A., Ghedin, E., MacKen, C. A., Fitch, A., Imai, M., Maher, E. A., Neumann, G. & Kawaoka, Y., Sep 2 2015, In : Nature communications. 6, 8148.

    Research output: Contribution to journalArticle

    Evolution of influenza B virus in Kuala Lumpur, Malaysia, between 1995 and 2008

    Sam, I. C., Su, Y. C. F., Chan, Y. F., Nor'E, S. S., Hassan, A., Jafar, F. L., Joseph, U., Halpin, R. A., Ghedin, E., Hooi, P. S., Fourment, M., Hassan, H., AbuBakar, S., Wentworth, D. E. & Smith, G. J. D., 2015, In : Journal of virology. 89, 18, p. 9689-9692 4 p.

    Research output: Contribution to journalArticle

    Functional analysis of microRNA activity in Brugia malayi

    Liu, C., Voronin, D., Poole, C. B., Bachu, S., Rogers, M. B., Jin, J., Ghedin, E., Lustigman, S., McReynolds, L. A. & Unnasch, T. R., Aug 1 2015, In : International Journal for Parasitology. 45, 9-10, p. 579-583 5 p.

    Research output: Contribution to journalArticle

    Genetic diversity of the 2013-14 human isolates of influenza H7N9 in China

    Farooqui, A., Leon, A. J., Huang, L., Wu, S., Cai, Y., Lin, P., Chen, W., Fang, X., Zeng, T., Liu, Y., Zhang, L., Su, T., Chen, W., Ghedin, E., Zhu, H., Guan, Y. & Kelvin, D. J., 2015, In : BMC Infectious Diseases. 15, p. 109 1 p.

    Research output: Contribution to journalArticle

    Identification and analysis of ingi-related retroposons in the trypanosomatid genomes

    Bringaud, F., Rogers, M. & Ghedin, E., 2015, In : Methods in Molecular Biology. 1201, p. 109-122 14 p.

    Research output: Contribution to journalArticle

    Identification of mammalian-adapting mutations in the polymerase complex of an avian H5N1 influenza virus

    Taft, A. S., Ozawa, M., Fitch, A., Depasse, J. V., Halfmann, P. J., Hill-Batorski, L., Hatta, M., Friedrich, T. C., Lopes, T. J. S., Maher, E. A., Ghedin, E., Macken, C. A., Neumann, G. & Kawaoka, Y., Jun 17 2015, In : Nature communications. 6, 7491.

    Research output: Contribution to journalArticle

    Intrahost dynamics of antiviral resistance in influenza a virus reflect complex patterns of segment linkage, reassortment, and natural selection

    Rogers, M. B., Song, T., Sebra, R., Greenbaum, B. D., Hamelin, M. E., Fitch, A., Twaddle, A., Cui, L., Holmes, E. C., Boivin, G. & Ghedina, E., Apr 7 2015, In : mBio. 6, 2, e02464-14.

    Research output: Contribution to journalArticle

    Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals

    Beck, J. M., Schloss, P. D., Venkataraman, A., Twigg H., ., Jablonski, K. A., Bushman, F. D., Campbell, T. B., Charlson, E. S., Collman, R. G., Crothers, K., Curtis, J. L., Drews, K. L., Flores, S. C., Fontenot, A. P., Foulkes, M. A., Frank, I., Ghedin, E., Huang, L., Lynch, S. V., Morris, A. & 5 others, Palmer, B. E., Schmidt, T. M., Sodergren, E., Weinstock, G. M. & Young, V. B., 2015, In : American Journal of Respiratory and Critical Care Medicine. 192, 11, p. 1335-44

    Research output: Contribution to journalArticle

    The administration of intranasal live attenuated influenza vaccine induces changes in the nasal microbiota and nasal epithelium gene expression profiles

    Tarabichi, Y., Li, K., Hu, S., Nguyen, C., Wang, X., Elashoff, D., Saira, K., Frank, B., Bihan, M., Ghedin, E., Methé, B. A. & Deng, J. C., Dec 15 2015, In : Microbiome. 3, 1 p.

    Research output: Contribution to journalArticle

    Topographic diversity of the respiratory tract mycobiome and alteration in HIV and lung disease

    Cui, L., Lucht, L., Tipton, L., Rogers, M. B., Fitch, A., Kessinger, C., Camp, D., Kingsley, L., Leo, N., Greenblatt, R. M., Fong, S., Stone, S., Dermand, J. C., Kleerup, E. C., Huang, L., Morris, A. & Ghedin, E., Apr 15 2015, In : American Journal of Respiratory and Critical Care Medicine. 191, 8, p. 932-942 11 p.

    Research output: Contribution to journalArticle

    2014

    A large-scale immuno-epidemiological simulation of influenza A epidemics

    Lukens, S., Depasse, J., Rosenfeld, R., Ghedin, E., Mochan, E., Brown, S. T., Grefenstette, J., Burke, D. S., Swigon, D. & Clermont, G., Sep 29 2014, In : BMC public health. 14, 1, 1019.

    Research output: Contribution to journalArticle

    Arboretum and Puerto Almendras viruses: Two novel rhabdoviruses isolated from mosquitoes in Peru

    Vasilakis, N., Castro-Llanos, F., Widen, S. G., Aguilar, P. V., Guzman, H., Guevara, C., Fernandez, R., Auguste, A. J., Wood, T. G., Popov, V., Mundal, K., Ghedin, E., Kochel, T. J., Holmes, E. C., Walker, P. J. & Tesh, R. B., 2014, In : Journal of General Virology. 95, PART 4, p. 787-792 6 p.

    Research output: Contribution to journalArticle

    Deliberate Attenuation of Chikungunya Virus by Adaptation to Heparan Sulfate-Dependent Infectivity: A Model for Rational Arboviral Vaccine Design

    Gardner, C. L., Hritz, J., Sun, C., Vanlandingham, D. L., Song, T. Y., Ghedin, E., Higgs, S., Klimstra, W. B. & Ryman, K. D., Feb 2014, In : PLoS neglected tropical diseases. 8, 2, e2719.

    Research output: Contribution to journalArticle