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Jane Carlton

Silver Professor; Professor of Biology

    1993 …2020

    Research output per year

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    Research Output

    2020

    Clinical and epidemiological characterization of severe Plasmodium vivax malaria in Gujarat, India

    Anvikar, A. R., van Eijk, A. M., Shah, A., Upadhyay, K. J., Sullivan, S. A., Patel, A. J., Joshi, J. M., Tyagi, S., Singh, R., Carlton, J. M., Gupta, H. & Wassmer, S. C., Jan 1 2020, In : Virulence. 11, 1, p. 730-738 9 p.

    Research output: Contribution to journalArticle

    Open Access
    2019

    Antibody responses within two leading Plasmodium vivax vaccine candidate antigens in three geographically diverse malaria-endemic regions of India

    Kale, S., Yadav, C. P., Rao, P. N., Shalini, S., Eapen, A., Srivasatava, H. C., Sharma, S. K., Pande, V., Carlton, J. M., Singh, O. P. & Mallick, P. K., Dec 16 2019, In : Malaria Journal. 18, 1, 425.

    Research output: Contribution to journalArticle

    Open Access

    Dengue, chikungunya, and scrub typhus are important etiologies of non-malarial febrile illness in Rourkela, Odisha, India

    Rao, P. N., Van Eijk, A. M., Choubey, S., Ali, S. Z., Dash, A., Barla, P., Oraon, R. R., Patel, G., Nandini, P., Acharya, S., Mohanty, S., Carlton, J. M. & Satpathi, S., Jul 3 2019, In : BMC Infectious Diseases. 19, 1, 572.

    Research output: Contribution to journalArticle

    Open Access

    Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

    Edwards, R. A., Vega, A. A., Norman, H. M., Ohaeri, M., Levi, K., Dinsdale, E. A., Cinek, O., Aziz, R. K., McNair, K., Barr, J. J., Bibby, K., Brouns, S. J. J., Cazares, A., de Jonge, P. A., Desnues, C., Díaz Muñoz, S. L., Fineran, P. C., Kurilshikov, A., Lavigne, R., Mazankova, K. & 97 others, McCarthy, D. T., Nobrega, F. L., Reyes Muñoz, A., Tapia, G., Trefault, N., Tyakht, A. V., Vinuesa, P., Wagemans, J., Zhernakova, A., Aarestrup, F. M., Ahmadov, G., Alassaf, A., Anton, J., Asangba, A., Billings, E. K., Cantu, V. A., Carlton, J. M., Cazares, D., Cho, G. S., Condeff, T., Cortés, P., Cranfield, M., Cuevas, D. A., De la Iglesia, R., Decewicz, P., Doane, M. P., Dominy, N. J., Dziewit, L., Elwasila, B. M., Eren, A. M., Franz, C., Fu, J., Garcia-Aljaro, C., Ghedin, E., Gulino, K. M., Haggerty, J. M., Head, S. R., Hendriksen, R. S., Hill, C., Hyöty, H., Ilina, E. N., Irwin, M. T., Jeffries, T. C., Jofre, J., Junge, R. E., Kelley, S. T., Khan Mirzaei, M., Kowalewski, M., Kumaresan, D., Leigh, S. R., Lipson, D., Lisitsyna, E. S., Llagostera, M., Maritz, J. M., Marr, L. C., McCann, A., Molshanski-Mor, S., Monteiro, S., Moreira-Grez, B., Morris, M., Mugisha, L., Muniesa, M., Neve, H., Nguyen, N. P., Nigro, O. D., Nilsson, A. S., O’Connell, T., Odeh, R., Oliver, A., Piuri, M., Prussin, A. J., Qimron, U., Quan, Z. X., Rainetova, P., Ramírez-Rojas, A., Raya, R., Reasor, K., Rice, G. A. O., Rossi, A., Santos, R., Shimashita, J., Stachler, E. N., Stene, L. C., Strain, R., Stumpf, R., Torres, P. J., Twaddle, A., Ugochi Ibekwe, M. A., Villagra, N., Wandro, S., White, B., Whiteley, A., Whiteson, K. L., Wijmenga, C., Zambrano, M. M., Zschach, H. & Dutilh, B. E., Oct 1 2019, In : Nature Microbiology. 4, 10, p. 1727-1736 10 p.

    Research output: Contribution to journalArticle

    Longitudinal comparison of bacterial diversity and antibiotic resistance genes in New York City sewage

    Joseph, S. M., Battaglia, T., Maritz, J. M., Carlton, J. M. & Blaser, M. J., Jan 1 2019, In : mSystems. 4, 4, e00327-19.

    Research output: Contribution to journalArticle

    Open Access

    Patterns of protist diversity associated with raw sewage in New York City

    Maritz, J. M., Ten Eyck, T. A., Elizabeth Alter, S. & Carlton, J. M., Nov 1 2019, In : ISME Journal. 13, 11, p. 2750-2763 14 p.

    Research output: Contribution to journalArticle

    Open Access

    The burden of submicroscopic and asymptomatic malaria in India revealed from epidemiology studies at three varied transmission sites in India

    van Eijk, A. M., Sutton, P. L., Ramanathapuram, L., Sullivan, S. A., Kanagaraj, D., Priya, G. S. L., Ravishankaran, S., Asokan, A., Sangeetha, V., Rao, P. N., Wassmer, S. C., Tandel, N., Patel, A., Desai, N., Choubey, S., Ali, S. Z., Barla, P., Oraon, R. R., Mohanty, S., Mishra, S. & 12 others, Kale, S., Bandyopadhyay, N., Mallick, P. K., Huck, J., Valecha, N., Singh, O. P., Pradhan, K., Singh, R., Sharma, S. K., Srivastava, H. C., Carlton, J. M. & Eapen, A., Dec 1 2019, In : Scientific reports. 9, 1, 17095.

    Research output: Contribution to journalArticle

    Open Access
    2018

    Does the common sexually transmitted parasite Trichomonas vaginalis have sex?

    Bradic, M. & Carlton, J. M., Mar 2018, In : PLoS Pathogens. 14, 3, e1006831.

    Research output: Contribution to journalArticle

    Evolution of human malaria

    Carlton, J. M., Jun 1 2018, In : Nature Microbiology. 3, 6, p. 642-643 2 p.

    Research output: Contribution to journalReview article

    Malaria in Meghalaya: A systematic literature review and analysis of data from the National Vector-Borne Disease Control Programme

    Kessler, A., Van Eijk, A. M., Jamir, L., Walton, C., Carlton, J. M. & Albert, S., Nov 6 2018, In : Malaria Journal. 17, 1, 411.

    Research output: Contribution to journalArticle

    Malaria parasite evolution in a test tube

    Carlton, J. M., Jan 12 2018, In : Science. 359, 6372, p. 159-160 2 p.

    Research output: Contribution to journalReview article

    Overlapping community compositions of gut and fecal microbiomes in lab-reared and field-collected German cockroaches

    Kakumanu, M. L., Maritz, J. M., Carlton, J. M. & Schal, C., Sep 1 2018, In : Applied and Environmental Microbiology. 84, 17, e01037-18.

    Research output: Contribution to journalArticle

    Single-dose versus 7-day-dose metronidazole for the treatment of trichomoniasis in women: an open-label, randomised controlled trial

    Kissinger, P., Muzny, C. A., Mena, L. A., Lillis, R. A., Schwebke, J. R., Beauchamps, L., Taylor, S. N., Schmidt, N., Myers, L., Augostini, P., Secor, W. E., Bradic, M., Carlton, J. M. & Martin, D. H., Nov 2018, In : The Lancet Infectious Diseases. 18, 11, p. 1251-1259 9 p.

    Research output: Contribution to journalArticle

    2017

    A Feast of Malaria Parasite Genomes

    Carlton, J. M. & Sullivan, S. A., Mar 8 2017, In : Cell Host and Microbe. 21, 3, p. 310-312 3 p.

    Research output: Contribution to journalShort survey

    An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads

    Maritz, J. M., Rogers, K. H., Rock, T. M., Liu, N., Joseph, S., Land, K. M. & Carlton, J. M., Nov 1 2017, In : Microbial Ecology. 74, 4, p. 923-936 14 p.

    Research output: Contribution to journalArticle

    Characterizing Antibody Responses to Plasmodium vivax and Plasmodium falciparum Antigens in India Using Genome-Scale Protein Microarrays

    Uplekar, S., Rao, P. N., Ramanathapuram, L., Awasthi, V., Verma, K., Sutton, P., Ali, S. Z., Patel, A., Sri Lakshmi Priya, G., Ravishankaran, S., Desai, N., Tandel, N., Choubey, S., Barla, P., Kanagaraj, D., Eapen, A., Pradhan, K., Singh, R., Jain, A., Felgner, P. L. & 3 others, Davies, D. H., Carlton, J. M. & Das, J., Jan 24 2017, In : PLoS neglected tropical diseases. 11, 1, e0005323.

    Research output: Contribution to journalArticle

    Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

    Maritz, J. M., Sullivan, S. A., Prill, R. J., Aksoy, E., Scheid, P. & Carlton, J. M., Apr 2017, In : PloS one. 12, 4, e0175527.

    Research output: Contribution to journalArticle

    Genetic indicators of drug resistance in the highly repetitive genome of trichomonas vaginalis

    Bradic, M., Warring, S. D., Tooley, G. E., Scheid, P., Secor, W. E., Land, K. M., Huang, P. J., Chen, T. W., Lee, C. C., Tang, P., Sullivan, S. A. & Carlton, J. M., Jan 1 2017, In : Genome biology and evolution. 9, 6, p. 1658-1672 15 p.

    Research output: Contribution to journalArticle

    2016

    A method for amplicon deep sequencing of drug resistance genes in plasmodium falciparum clinical isolates from India

    Rao, P. N., Uplekar, S., Kayal, S., Mallick, P. K., Bandyopadhyay, N., Kale, S., Singh, O. P., Mohanty, A., Mohanty, S., Wassmer, S. C. & Carlton, J. M., Jun 2016, In : Journal of Clinical Microbiology. 54, 6, p. 1500-1511 12 p.

    Research output: Contribution to journalArticle

    Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi

    Sutton, P. L., Luo, Z., Divis, P. C. S., Friedrich, V. K., Conway, D. J., Singh, B., Barnwell, J. W., Carlton, J. M. & Sullivan, S. A., Jun 1 2016, In : Infection, Genetics and Evolution. 40, p. 243-252 10 p.

    Research output: Contribution to journalArticle

    Comparative assessment on the prevalence of mutations in the Plasmodium falciparum drug-resistant genes in two different ecotypes of Odisha state, India

    Kar, N. P., Chauhan, K., Nanda, N., Kumar, A., Carlton, J. M. & Das, A., Jul 1 2016, In : Infection, Genetics and Evolution. 41, p. 47-55 9 p.

    Research output: Contribution to journalArticle

    Glycophorins, Blood Groups, and Protection from Severe Malaria

    Wassmer, S. C. & Carlton, J. M., Jan 1 2016, In : Trends in Parasitology. 32, 1, p. 5-7 3 p.

    Research output: Contribution to journalShort survey

    Jane Carlton: It's an Omics World After All

    Carlton, J., May 1 2016, In : Trends in Parasitology. 32, 5, p. 349-351 3 p.

    Research output: Contribution to journalArticle

    Malaria study data integration and information retrieval based on OBO Foundry ontologies

    Zheng, J., Cade, J. S., Brunk, B., Roos, D. S., Stoeckert, C. J., Sullivan, S. A., Carlton, J. M., James, S. E., Arinaitwe, E., Carrasco-Escobar, G., Gamboa, D., Greenhouse, B., Dorsey, G., Maguina-Mercedes, P. & Vinetz, J. M., Jan 1 2016, In : CEUR Workshop Proceedings. 1747

    Research output: Contribution to journalConference article

    Microbial community patterns associated with automated teller machine keypads in New York City

    Bik, H. M., Maritz, J. M., Luong, A., Shin, H., Dominguez-Bello, M. G. & Carlton, J. M., Nov 1 2016, In : mSphere. 1, 6, e00226-16.

    Research output: Contribution to journalArticle

    Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax

    Hupalo, D. N., Luo, Z., Melnikov, A., Sutton, P. L., Rogov, P., Escalante, A., Vallejo, A. F., Herrera, S., Arévalo-Herrera, M., Fan, Q., Wang, Y., Cui, L., Lucas, C. M., Durand, S., Sanchez, J. F., Christian Baldeviano, G., Lescano, A. G., Laman, M., Barnadas, C., Barry, A. & 16 others, Mueller, I., Kazura, J. W., Eapen, A., Kanagaraj, D., Valecha, N., Ferreira, M. U., Roobsoong, W., Nguitragool, W., Sattabonkot, J., Gamboa, D., Kosek, M., Vinetz, J. M., González-Cerón, L., Birren, B. W., Neafsey, D. E. & Carlton, J. M., Aug 1 2016, In : Nature Genetics. 48, 8, p. 953-958 6 p.

    Research output: Contribution to journalArticle

    The use of mosquito repellents at three sites in India with declining malaria transmission: Surveys in the community and clinic

    Van Eijk, A. M., Ramanathapuram, L., Sutton, P. L., Peddy, N., Choubey, S., Mohanty, S., Asokan, A., Ravishankaran, S., Priya, G. S. L., Johnson, J. A., Velayutham, S., Kanagaraj, D., Patel, A., Desai, N., Tandel, N., Sullivan, S. A., Wassmer, S. C., Singh, R., Pradhan, K., Carlton, J. M. & 3 others, Srivasatava, H. C., Eapen, A. & Sharma, S. K., Jul 27 2016, In : Parasites and Vectors. 9, 1, 418.

    Research output: Contribution to journalArticle

    What is the value of reactive case detection in malaria control? A case-study in India and a systematic review

    Van Eijk, A. M., Ramanathapuram, L., Sutton, P. L., Kanagaraj, D., Sri Lakshmi Priya, G., Ravishankaran, S., Asokan, A., Tandel, N., Patel, A., Desai, N., Singh, R., Sullivan, S. A., Carlton, J. M., Srivastava, H. C. & Eapen, A., Feb 6 2016, In : Malaria Journal. 15, 1, 67.

    Research output: Contribution to journalReview article

    2015

    Erratum: Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics (Cell Systems (2015) 1 (72-87) )

    Afshinnekoo, E., Meydan, C., Chowdhury, S., Jaroudi, D., Boyer, C., Bernstein, N., Maritz, J. M., Reeves, D., Gandara, J., Chhangawala, S., Ahsanuddin, S., Simmons, A., Nessel, T., Sundaresh, B., Pereira, E., Jorgensen, E., Kolokotronis, S. O., Kirchberger, N., Garcia, I., Gandara, D. & 26 others, Dhanraj, S., Nawrin, T., Saletore, Y., Alexander, N., Vijay, P., Hénaff, E. M., Zumbo, P., Walsh, M., O'Mullan, G. D., Tighe, S., Dudley, J. T., Dunaif, A., Ennis, S., O'halloran, E., Magalhaes, T. R., Boone, B., Jones, A. L., Muth, T. R., Paolantonio, K. S., Alter, E., Schadt, E. E., Garbarino, J., Prill, R. J., Carlton, J. M., Levy, S. & Mason, C. E., Jul 29 2015, In : Cell Systems. 1, 1, p. 97-97.e3 13.

    Research output: Contribution to journalComment/debate

    Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics

    Afshinnekoo, E., Meydan, C., Chowdhury, S., Jaroudi, D., Boyer, C., Bernstein, N., Maritz, J. M., Reeves, D., Gandara, J., Chhangawala, S., Ahsanuddin, S., Simmons, A., Nessel, T., Sundaresh, B., Pereira, E., Jorgensen, E., Kolokotronis, S. O., Kirchberger, N., Garcia, I., Gandara, D. & 26 others, Dhanraj, S., Nawrin, T., Saletore, Y., Alexander, N., Vijay, P., Hénaff, E. M., Zumbo, P., Walsh, M., O'Mullan, G. D., Tighe, S., Dudley, J. T., Dunaif, A., Ennis, S., O'Halloran, E., Magalhaes, T. R., Boone, B., Jones, A. L., Muth, T. R., Paolantonio, K. S., Alter, E., Schadt, E. E., Garbarino, J., Prill, R. J., Carlton, J. M., Levy, S. & Mason, C. E., Jul 29 2015, In : Cell Systems. 1, 1, p. 72-87 16 p., 1.

    Research output: Contribution to journalArticle

    Malaria Molecular Epidemiology: Lessons from the International Centers of Excellence for Malaria Research Network

    Escalante, A. A., Ferreira, M. U., Vinetz, J. M., Volkman, S. K., Cui, L., Gamboa, D., Krogstad, D. J., Barry, A. E., Carlton, J. M., van Eijk, A. M. A., Pradhan, K., Mueller, I., Greenhouse, B., Pacheco, M. A., Vallejo, A. F., Herrera, S. & Felger, I., Sep 1 2015, In : The American journal of tropical medicine and hygiene. 93, 3, p. 79-86 8 p.

    Research output: Contribution to journalArticle

    Modern Methods for Delineating Metagenomic Complexity

    Afshinnekoo, E., Meydan, C., Chowdhury, S., Jaroudi, D., Boyer, C., Bernstein, N., Maritz, J. M., Reeves, D., Gandara, J., Chhangawala, S., Ahsanuddin, S., Simmons, A., Nessel, T., Sundaresh, B., Pereira, E., Jorgensen, E., Kolokotronis, S. O., Kirchberger, N., Garcia, I., Gandara, D. & 26 others, Dhanraj, S., Nawrin, T., Saletore, Y., Alexander, N., Vijay, P., Hénaff, E. M., Zumbo, P., Walsh, M., O'Mullan, G. D., Tighe, S., Dudley, J. T., Dunaif, A., Ennis, S., O'Halloran, E., Magalhaes, T. R., Boone, B., Jones, A. L., Muth, T. R., Paolantonio, K. S., Alter, E., Schadt, E. E., Garbarino, J., Prill, R. J., Carlton, J. M., Levy, S. & Mason, C. E., Jul 29 2015, In : Cell Systems. 1, 1, p. 6-7 2 p., 14.

    Research output: Contribution to journalLetter

    Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research

    Carlton, J. M., Volkman, S. K., Uplekar, S., Hupalo, D. N., Pereira Alves, J. M., Cui, L., Donnelly, M., Roos, D. S., Harb, O. S., Acosta, M., Read, A., Ribolla, P. E. M., Singh, O. P., Valecha, N., Wassmer, S. C., Ferreira, M. & Escalante, A. A., Sep 1 2015, In : The American journal of tropical medicine and hygiene. 93, 3, p. 87-98 12 p.

    Research output: Contribution to journalArticle

    The biology of plasmodium vivax explored through genomics

    Luo, Z., Sullivan, S. A. & Carlton, J. M., Apr 1 2015, In : Annals of the New York Academy of Sciences. 1342, 1, p. 53-61 9 p.

    Research output: Contribution to journalArticle

    The impact of genomics on population genetics of parasitic diseases

    Hupalo, D. N., Bradic, M. & Carlton, J. M., Feb 1 2015, In : Current Opinion in Microbiology. 23, p. 49-54 6 p.

    Research output: Contribution to journalReview article

    2014

    A review of malaria transmission dynamics in forest ecosystems

    Kar, N. P., Kumar, A., Singh, O. P., Carlton, J. M. & Nanda, N., Jun 9 2014, In : Parasites and Vectors. 7, 1, 265.

    Research output: Contribution to journalReview article

    Chloroquine efficacy studies confirm drug susceptibility of Plasmodium vivax in Chennai, India

    Shalini, S., Chaudhuri, S., Sutton, P. L., Mishra, N., Srivastava, N., David, J. K., Ravindran, K. J., Carlton, J. M. & Eapen, A., Mar 31 2014, In : Malaria Journal. 13, 1, 129.

    Research output: Contribution to journalArticle

    The origin and diversification of the merozoite surface protein 3 (msp3) multi-gene family in Plasmodium vivax and related parasites

    Rice, B. L., Acosta, M. M., Pacheco, M. A., Carlton, J. M., Barnwell, J. W. & Escalante, A. A., Sep 2014, In : Molecular Phylogenetics and Evolution. 78, 1, p. 172-184 13 p.

    Research output: Contribution to journalArticle

    The Tc1/mariner transposable element family shapes genetic variation and gene expression in the protist Trichomonas vaginalis

    Bradic, M., Warring, S. D., Low, V. & Carlton, J. M., Apr 24 2014, In : Mobile DNA. 5, 1, 12.

    Research output: Contribution to journalArticle

    What is the importance of zoonotic trichomonads for human health?

    Maritz, J. M., Land, K. M., Carlton, J. M. & Hirt, R. P., Jul 2014, In : Trends in Parasitology. 30, 7, p. 333-341 9 p.

    Research output: Contribution to journalReview article

    2013

    Ahead of the curve: Next generation estimators of drug resistance in malaria infections

    Mideo, N., Kennedy, D. A., Carlton, J. M., Bailey, J. A., Juliano, J. J. & Read, A. F., Jul 1 2013, In : Trends in Parasitology. 29, 7, p. 321-328 8 p.

    Research output: Contribution to journalReview article

    Genetic diversity in Trichomonas vaginalis

    Meade, J. C. & Carlton, J. M., Sep 1 2013, In : Sexually transmitted infections. 89, 6, p. 444-448 5 p.

    Research output: Contribution to journalReview article

    Genetic diversity of Trichomonas vaginalis reinfection in HIV-positive women

    Conrad, M. D., Kissinger, P., Schmidt, N., Martin, D. H. & Carlton, J. M., Sep 1 2013, In : Sexually transmitted infections. 89, 6, p. 473-478 6 p.

    Research output: Contribution to journalArticle

    Genomics, Population Genetics and Evolutionary History of Plasmodium vivax

    Carlton, J. M., Das, A. & Escalante, A. A., 2013, In : Advances in Parasitology. 81, p. 203-222 20 p.

    Research output: Contribution to journalArticle

    Getting trichy: Tools and approaches to interrogating Trichomonas vaginalis in a post-genome world

    Conrad, M. D., Bradic, M., Warring, S. D., Gorman, A. W. & Carlton, J. M., Jan 1 2013, In : Trends in Parasitology. 29, 1, p. 17-25 9 p.

    Research output: Contribution to journalReview article

    Microsatellite analysis of chloroquine resistance associated alleles and neutral loci reveal genetic structure of Indian Plasmodium falciparum

    Mallick, P. K., Sutton, P. L., Singh, R., Singh, O. P., Dash, A. P., Singh, A. K., Carlton, J. M. & Bhasin, V. K., Oct 1 2013, In : Infection, Genetics and Evolution. 19, p. 164-175 12 p.

    Research output: Contribution to journalArticle

    2012

    Association between trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women

    Brotman, R. M., Bradford, L. L., Conrad, M., Gajer, P., Ault, K., Peralta, L., Forney, L. J., Carlton, J. M., Abdo, Z. & Ravel, J., Oct 1 2012, In : Sexually Transmitted Diseases. 39, 10, p. 807-812 6 p.

    Research output: Contribution to journalArticle

    Extensive genetic diversity, unique population structure and evidence of genetic exchange in the sexually transmitted parasite Trichomonas vaginalis

    Conrad, M. D., Gorman, A. W., Schillinger, J. A., Fiori, P. L., Arroyo, R., Malla, N., Dubey, M. L., Gonzalez, J., Blank, S., Secor, W. E. & Carlton, J. M., Mar 1 2012, In : PLoS neglected tropical diseases. 6, 3, e1573.

    Research output: Contribution to journalArticle