A non-derivative MFCC optimization study of cyclohexapeptide monohydrate

Xi Hua Chen, John Z. Zhang

Research output: Contribution to journalArticlepeer-review

Abstract

The MFCC-downhill simplex method is presented to study the binding structure of small ligands in large molecular complex systems. This method employs the Molecular Fractionation with Conjugated Caps (MFCC) approach to compute the interaction energy-structure relation of the system and implements the downhill simplex algorithm for structural optimization. The method is tested on a molecular system of cyclo-AAGAGG·H2O to optimize the binding position of water molecule to the fixed cyclohexapeptide. The MFCC-downhill simplex optimization results are in good agreement with the crystal structure. An MFCC-Powell optimization method which uses the Powell's minimization algorithm is also described and tested on the same system. The MFCC-downhill simplex optimization is more efficient than the MFCC-Powell method.

Original languageEnglish (US)
Article number17
Pages (from-to)431-437+ii
JournalChinese Journal of Chemical Physics
Volume20
Issue number4
DOIs
StatePublished - Aug 1 2007

Keywords

  • Binding structure
  • MFCC-downhill simplex method
  • Optimization

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry

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