TY - JOUR
T1 - A unified nomenclature of nitrate transporter 1/peptide transporter family members in plants
AU - Léran, Sophie
AU - Varala, Kranthi
AU - Boyer, Jean Christophe
AU - Chiurazzi, Maurizio
AU - Crawford, Nigel
AU - Daniel-Vedele, Françoise
AU - David, Laure
AU - Dickstein, Rebecca
AU - Fernandez, Emilio
AU - Forde, Brian
AU - Gassmann, Walter
AU - Geiger, Dietmar
AU - Gojon, Alain
AU - Gong, Ji Ming
AU - Halkier, Barbara A.
AU - Harris, Jeanne M.
AU - Hedrich, Rainer
AU - Limami, Anis M.
AU - Rentsch, Doris
AU - Seo, Mitsunori
AU - Tsay, Yi Fang
AU - Zhang, Mingyong
AU - Coruzzi, Gloria
AU - Lacombe, Benoît
N1 - Funding Information:
We would like to thank colleagues from our laboratory for their participation in this discussion. We apologize to authors whose work could not be cited owing to constraints of space. This work was supported by the Institut National de la Recherche Agronomique (CJS PhD Fellowship to S.L. and Projet Département BAP, BAP2013-33-NITSE to B.L.), Agence Nationale de la Recherche (ANR-11-JSV6-002-01-NUTSE to B.L.), Agropolis Fondation (RHIZOPOLIS grant #07024 to A.G.), and the Région Languedoc-Roussillon (Chercheur d’Avenir to B.L.). The phylogenetic analysis in this study was performed using the BigPlant phylogenomic pipeline funded by NSF Plant Genome Grant IOS-0922738.
PY - 2014/1
Y1 - 2014/1
N2 - In comparison to their animal and bacterial counterparts, these plant proteins transport a wide variety of substrates: nitrate, peptides, amino acids, dicarboxylates, glucosinolates, IAA, and ABA. The phylogenetic relationship of the members of the NRT1/PTR family in 31 fully sequenced plant genomes allowed the identification of unambiguous clades, defining eight subfamilies. The phylogenetic tree was used to determine a unified nomenclature of this family named NPF, for NRT1/. PTR FAMILY. We propose that the members should be named accordingly: NPFX.Y, where X denotes the subfamily and Y the individual member within the species.
AB - In comparison to their animal and bacterial counterparts, these plant proteins transport a wide variety of substrates: nitrate, peptides, amino acids, dicarboxylates, glucosinolates, IAA, and ABA. The phylogenetic relationship of the members of the NRT1/PTR family in 31 fully sequenced plant genomes allowed the identification of unambiguous clades, defining eight subfamilies. The phylogenetic tree was used to determine a unified nomenclature of this family named NPF, for NRT1/. PTR FAMILY. We propose that the members should be named accordingly: NPFX.Y, where X denotes the subfamily and Y the individual member within the species.
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U2 - 10.1016/j.tplants.2013.08.008
DO - 10.1016/j.tplants.2013.08.008
M3 - Review article
C2 - 24055139
AN - SCOPUS:84891371414
SN - 1360-1385
VL - 19
SP - 5
EP - 9
JO - Trends in Plant Science
JF - Trends in Plant Science
IS - 1
ER -