TY - JOUR
T1 - An interpretable classifier for high-resolution breast cancer screening images utilizing weakly supervised localization
AU - Shen, Yiqiu
AU - Wu, Nan
AU - Phang, Jason
AU - Park, Jungkyu
AU - Liu, Kangning
AU - Tyagi, Sudarshini
AU - Heacock, Laura
AU - Kim, S. Gene
AU - Moy, Linda
AU - Cho, Kyunghyun
AU - Geras, Krzysztof J.
N1 - Funding Information:
The authors would like to thank Joe Katsnelson, Mario Videna and Abdul Khaja for supporting our computing environment and Yizhuo Ma for providing graphical design consultation. We also gratefully acknowledge the support of Nvidia Corporation with the donation of some of the GPUs used in this research. This work was supported in part by grants from the National Institutes of Health (grants R21CA225175 and P41EB017183 ) and the National Science Foundation (grant 1922658 ).
Publisher Copyright:
© 2020
PY - 2021/2
Y1 - 2021/2
N2 - Medical images differ from natural images in significantly higher resolutions and smaller regions of interest. Because of these differences, neural network architectures that work well for natural images might not be applicable to medical image analysis. In this work, we propose a novel neural network model to address these unique properties of medical images. This model first uses a low-capacity, yet memory-efficient, network on the whole image to identify the most informative regions. It then applies another higher-capacity network to collect details from chosen regions. Finally, it employs a fusion module that aggregates global and local information to make a prediction. While existing methods often require lesion segmentation during training, our model is trained with only image-level labels and can generate pixel-level saliency maps indicating possible malignant findings. We apply the model to screening mammography interpretation: predicting the presence or absence of benign and malignant lesions. On the NYU Breast Cancer Screening Dataset, our model outperforms (AUC = 0.93) ResNet-34 and Faster R-CNN in classifying breasts with malignant findings. On the CBIS-DDSM dataset, our model achieves performance (AUC = 0.858) on par with state-of-the-art approaches. Compared to ResNet-34, our model is 4.1x faster for inference while using 78.4% less GPU memory. Furthermore, we demonstrate, in a reader study, that our model surpasses radiologist-level AUC by a margin of 0.11.
AB - Medical images differ from natural images in significantly higher resolutions and smaller regions of interest. Because of these differences, neural network architectures that work well for natural images might not be applicable to medical image analysis. In this work, we propose a novel neural network model to address these unique properties of medical images. This model first uses a low-capacity, yet memory-efficient, network on the whole image to identify the most informative regions. It then applies another higher-capacity network to collect details from chosen regions. Finally, it employs a fusion module that aggregates global and local information to make a prediction. While existing methods often require lesion segmentation during training, our model is trained with only image-level labels and can generate pixel-level saliency maps indicating possible malignant findings. We apply the model to screening mammography interpretation: predicting the presence or absence of benign and malignant lesions. On the NYU Breast Cancer Screening Dataset, our model outperforms (AUC = 0.93) ResNet-34 and Faster R-CNN in classifying breasts with malignant findings. On the CBIS-DDSM dataset, our model achieves performance (AUC = 0.858) on par with state-of-the-art approaches. Compared to ResNet-34, our model is 4.1x faster for inference while using 78.4% less GPU memory. Furthermore, we demonstrate, in a reader study, that our model surpasses radiologist-level AUC by a margin of 0.11.
KW - Breast cancer screening
KW - Deep learning
KW - High-resolution image classification
KW - Weakly supervised localization
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U2 - 10.1016/j.media.2020.101908
DO - 10.1016/j.media.2020.101908
M3 - Article
C2 - 33383334
AN - SCOPUS:85098687261
SN - 1361-8415
VL - 68
JO - Medical Image Analysis
JF - Medical Image Analysis
M1 - 101908
ER -