TY - JOUR
T1 - Asynchronous signal passing for tile self-assembly
T2 - Fuel efficient computation and efficient assembly of shapes
AU - Padilla, Jennifer E.
AU - Patitz, Matthew J.
AU - Schweller, Robert T.
AU - Seeman, Nadrian C.
AU - Summers, Scott M.
AU - Zhong, Xingsi
N1 - Funding Information:
The authors would like to thank Nataˇsa Jonoska and Daria Karpenko for fruitful discussions and comments on this work. Research was supported by National Science Foundation Grant CCF-1117210 to J.E.P. and N.C.S. and National Science Foundation Grant CCF-1117672 to M.J.P., R.T.S., and X.Z.
PY - 2014/6
Y1 - 2014/6
N2 - In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla et al. [24] to be asynchronous, allowing any action of turning a glue on or off, attaching a new tile, or breaking apart an assembly to happen in any order. Within this highly generalized model we provide three new solutions to tile self-assembly problems that have been addressed within the abstract Tile Assembly Model and its variants, showing that signal passing tiles allow for substantial improvement across multiple complexity metrics. Our first result utilizes a recursive assembly process to achieve tile-type efficient assembly of linear structures, using provably fewer tile types than what is possible in standard tile assembly models. Our second system of signal-passing tiles simulates any Turing machine with high fuel efficiency by using only a constant number of tiles per computation step. Our third system assembles the discrete Sierpinski triangle, demonstrating that this pattern can be strictly self-assembled within the STAM. This result is of particular interest in that it is known that this pattern cannot self-assemble within a number of well studied tile self-assembly models. Notably, all of our constructions are at temperature 1, further demonstrating that signal-passing confers the power to bypass many restrictions found in standard tile assembly models.
AB - In this paper we demonstrate the power of a model of tile self-assembly based on active glues which can dynamically change state. We formulate the Signal-passing Tile Assembly Model (STAM), based on the model of Padilla et al. [24] to be asynchronous, allowing any action of turning a glue on or off, attaching a new tile, or breaking apart an assembly to happen in any order. Within this highly generalized model we provide three new solutions to tile self-assembly problems that have been addressed within the abstract Tile Assembly Model and its variants, showing that signal passing tiles allow for substantial improvement across multiple complexity metrics. Our first result utilizes a recursive assembly process to achieve tile-type efficient assembly of linear structures, using provably fewer tile types than what is possible in standard tile assembly models. Our second system of signal-passing tiles simulates any Turing machine with high fuel efficiency by using only a constant number of tiles per computation step. Our third system assembles the discrete Sierpinski triangle, demonstrating that this pattern can be strictly self-assembled within the STAM. This result is of particular interest in that it is known that this pattern cannot self-assemble within a number of well studied tile self-assembly models. Notably, all of our constructions are at temperature 1, further demonstrating that signal-passing confers the power to bypass many restrictions found in standard tile assembly models.
KW - Self-assembly
KW - Tile Assembly Model
KW - asynchronous behavior
KW - universal computation
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U2 - 10.1142/S0129054114400061
DO - 10.1142/S0129054114400061
M3 - Article
AN - SCOPUS:84905994021
SN - 0129-0541
VL - 25
SP - 459
EP - 488
JO - International Journal of Foundations of Computer Science
JF - International Journal of Foundations of Computer Science
IS - 4
ER -