BioPartsDB: A synthetic biology workflow web-application for education and research

Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader

    Research output: Contribution to journalArticle

    Abstract

    Synthetic biology has become a widely used technology, and expanding applications in research, education and industry require progress tracking for team-based DNA synthesis projects. Although some vendors are beginning to supply multi-kilobase sequence-verified constructs, synthesis workflows starting with short oligos remain important for cost savings and pedagogical benefit. We developed BioPartsDB as an open source, extendable workflow management system for synthetic biology projects with entry points for oligos and larger DNA constructs and ending with sequence-verified clones.

    Original languageEnglish (US)
    Pages (from-to)3519-3521
    Number of pages3
    JournalBioinformatics
    Volume32
    Issue number22
    DOIs
    StatePublished - Nov 15 2016

    ASJC Scopus subject areas

    • Statistics and Probability
    • Biochemistry
    • Molecular Biology
    • Computer Science Applications
    • Computational Theory and Mathematics
    • Computational Mathematics

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