TY - GEN
T1 - Compressive sensing based Q-space resampling for handling fast bulk motion in hardi acquisitions
AU - Elhabian, Shireen
AU - Vachet, Clement
AU - Piven, Joseph
AU - Styner, Martin
AU - Gerig, Guido
N1 - Publisher Copyright:
© 2016 IEEE.
PY - 2016/6/15
Y1 - 2016/6/15
N2 - Diffusion-weighted (DW) MRI has become a widely adopted imaging modality to reveal the underlying brain connectivity. Long acquisition times and/or non-cooperative patients increase the chances of motion-related artifacts. Whereas slow bulk motion results in inter-gradient misalignment which can be handled via retrospective motion correction algorithms, fast bulk motion usually affects data during the application of a single diffusion gradient causing signal dropout artifacts. Common practices opt to discard gradients bearing signal attenuation due to the difficulty of their retrospective correction, with the disadvantage to lose full gradients for further processing. Nonetheless, such attenuation might only affect limited number of slices within a gradient volume. Q-space resampling has recently been proposed to recover corrupted slices while saving gradients for subsequent reconstruction. However, few corrupted gradients are implicitly assumed which might not hold in case of scanning unsedated infants or patients in pain. In this paper, we propose to adopt recent advances in compressive sensing based reconstruction of the diffusion orientation distribution functions (ODF) with under sampled measurements to resample corrupted slices. We make use of Simple Harmonic Oscillator based Reconstruction and Estimation (SHORE) basis functions which can analytically model ODF from arbitrary sampled signals. We demonstrate the impact of the proposed resampling strategy compared to state-of-art resampling and gradient exclusion on simulated intra-gradient motion as well as samples from real DWI data.
AB - Diffusion-weighted (DW) MRI has become a widely adopted imaging modality to reveal the underlying brain connectivity. Long acquisition times and/or non-cooperative patients increase the chances of motion-related artifacts. Whereas slow bulk motion results in inter-gradient misalignment which can be handled via retrospective motion correction algorithms, fast bulk motion usually affects data during the application of a single diffusion gradient causing signal dropout artifacts. Common practices opt to discard gradients bearing signal attenuation due to the difficulty of their retrospective correction, with the disadvantage to lose full gradients for further processing. Nonetheless, such attenuation might only affect limited number of slices within a gradient volume. Q-space resampling has recently been proposed to recover corrupted slices while saving gradients for subsequent reconstruction. However, few corrupted gradients are implicitly assumed which might not hold in case of scanning unsedated infants or patients in pain. In this paper, we propose to adopt recent advances in compressive sensing based reconstruction of the diffusion orientation distribution functions (ODF) with under sampled measurements to resample corrupted slices. We make use of Simple Harmonic Oscillator based Reconstruction and Estimation (SHORE) basis functions which can analytically model ODF from arbitrary sampled signals. We demonstrate the impact of the proposed resampling strategy compared to state-of-art resampling and gradient exclusion on simulated intra-gradient motion as well as samples from real DWI data.
KW - Artifact reduction
KW - Compressive sensing
KW - Diffusion weighted imaging
KW - QBI
KW - SHORE
KW - Within-gradient motion
UR - http://www.scopus.com/inward/record.url?scp=84978431526&partnerID=8YFLogxK
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U2 - 10.1109/ISBI.2016.7493412
DO - 10.1109/ISBI.2016.7493412
M3 - Conference contribution
AN - SCOPUS:84978431526
T3 - Proceedings - International Symposium on Biomedical Imaging
SP - 907
EP - 910
BT - 2016 IEEE International Symposium on Biomedical Imaging
PB - IEEE Computer Society
T2 - 2016 IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016
Y2 - 13 April 2016 through 16 April 2016
ER -