De novo assembly and delivery to mouse cells of a 101 kb functional human gene

Leslie A. Mitchell, Laura H. McCulloch, Sudarshan Pinglay, Henri Berger, Nazario Bosco, Ran Brosh, Milica Bulajić, Emily Huang, Megan S. Hogan, James A. Martin, Esteban O. Mazzoni, Teresa Davoli, Matthew T. Maurano, Jef D. Boeke

Research output: Contribution to journalArticlepeer-review

Abstract

Design and large-scale synthesis of DNA has been applied to the functional study of viral and microbial genomes. New and expanded technology development is required to unlock the transformative potential of such bottom-up approaches to the study of larger mammalian genomes. Two major challenges include assembling and delivering long DNA sequences. Here, we describe a workflow for de novo DNA assembly and delivery that enables functional evaluation of mammalian genes on the length scale of 100 kilobase pairs (kb). The DNA assembly step is supported by an integrated robotic workcell. We demonstrate assembly of the 101 kb human HPRT1 gene in yeast from 3 kb building blocks, precision delivery of the resulting construct to mouse embryonic stem cells, and subsequent expression of the human protein from its full-length human gene in mouse cells. This workflow provides a framework for mammalian genome writing. We envision utility in producing designer variants of human genes linked to disease and their delivery and functional analysis in cell culture or animal models.

Original languageEnglish (US)
JournalGenetics
Volume218
Issue number1
DOIs
StatePublished - May 17 2021

Keywords

  • genome writing
  • mammalian genome engineering
  • recombinase-mediated cassette exchange
  • synthetic genomics

ASJC Scopus subject areas

  • Genetics

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