TY - JOUR
T1 - Fast linear solver for radiative transport equation with multiple right hand sides in diffuse optical tomography
AU - Jia, Jingfei
AU - Kim, Hyun K.
AU - Hielscher, Andreas H.
N1 - Funding Information:
This work has been supported in part by grants from the National Institutes of Health ( NHLBI 1R01HL115336-01 ) and ( NIAMS 5R01AR050026-10 ), the Wallace H. Coulter Foundation ( WHCF CU11-2443 ) and the New York City Partnership Fund – Bioaccelerate Program .
Publisher Copyright:
© 2015.
PY - 2015
Y1 - 2015
N2 - It is well known that radiative transfer equation (RTE) provides more accurate tomographic results than its diffusion approximation (DA). However, RTE-based tomographic reconstruction codes have limited applicability in practice due to their high computational cost. In this article, we propose a new efficient method for solving the RTE forward problem with multiple light sources in an all-at-once manner instead of solving it for each source separately. To this end, we introduce here a novel linear solver called block biconjugate gradient stabilized method (block BiCGStab) that makes full use of the shared information between different right hand sides to accelerate solution convergence. Two parallelized block BiCGStab methods are proposed for additional acceleration under limited threads situation. We evaluate the performance of this algorithm with numerical simulation studies involving the Delta-Eddington approximation to the scattering phase function. The results show that the single threading block RTE solver proposed here reduces computation time by a factor of 1.5-3 as compared to the traditional sequential solution method and the parallel block solver by a factor of 1.5 as compared to the traditional parallel sequential method. This block linear solver is, moreover, independent of discretization schemes and preconditioners used; thus further acceleration and higher accuracy can be expected when combined with other existing discretization schemes or preconditioners.
AB - It is well known that radiative transfer equation (RTE) provides more accurate tomographic results than its diffusion approximation (DA). However, RTE-based tomographic reconstruction codes have limited applicability in practice due to their high computational cost. In this article, we propose a new efficient method for solving the RTE forward problem with multiple light sources in an all-at-once manner instead of solving it for each source separately. To this end, we introduce here a novel linear solver called block biconjugate gradient stabilized method (block BiCGStab) that makes full use of the shared information between different right hand sides to accelerate solution convergence. Two parallelized block BiCGStab methods are proposed for additional acceleration under limited threads situation. We evaluate the performance of this algorithm with numerical simulation studies involving the Delta-Eddington approximation to the scattering phase function. The results show that the single threading block RTE solver proposed here reduces computation time by a factor of 1.5-3 as compared to the traditional sequential solution method and the parallel block solver by a factor of 1.5 as compared to the traditional parallel sequential method. This block linear solver is, moreover, independent of discretization schemes and preconditioners used; thus further acceleration and higher accuracy can be expected when combined with other existing discretization schemes or preconditioners.
KW - Block BiCGStab algorithm
KW - Diffuse optical tomography
KW - Multi-threading acceleration
KW - Multiple right hand sides
KW - Radiative transfer equation
UR - http://www.scopus.com/inward/record.url?scp=84955241112&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84955241112&partnerID=8YFLogxK
U2 - 10.1016/j.jqsrt.2015.07.015
DO - 10.1016/j.jqsrt.2015.07.015
M3 - Article
AN - SCOPUS:84955241112
SN - 0022-4073
VL - 167
SP - 10
EP - 22
JO - Journal of Quantitative Spectroscopy and Radiative Transfer
JF - Journal of Quantitative Spectroscopy and Radiative Transfer
ER -