TY - JOUR
T1 - GiardiaDB and TrichDB
T2 - Integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
AU - Aurrecoechea, Cristina
AU - Brestelli, John
AU - Brunk, Brian P.
AU - Carlton, Jane M.
AU - Dommer, Jennifer
AU - Fischer, Steve
AU - Gajria, Bindu
AU - Gao, Xin
AU - Gingle, Alan
AU - Grant, Greg
AU - Harb, Omar S.
AU - Heiges, Mark
AU - Innamorato, Frank
AU - Iodice, John
AU - Kissinger, Jessica C.
AU - Kraemer, Eileen
AU - Li, Wei
AU - Miller, John A.
AU - Morrison, Hilary G.
AU - Nayak, Vishal
AU - Pennington, Cary
AU - Pinney, Deborah F.
AU - Roos, David S.
AU - Ross, Chris
AU - Stoeckert, Christian J.
AU - Sullivan, Steven
AU - Treatman, Charles
AU - Wang, Haiming
N1 - Funding Information:
Federal funds from the National Institute of Allergy and Infectious Diseases; Department of Health and Human Services, National Institutes of Health (HHSN266200400037C). Funding for open access charge: National Institutes of Health (HHSN266200400037C).
PY - 2009
Y1 - 2009
N2 - GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.
AB - GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data.
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U2 - 10.1093/nar/gkn631
DO - 10.1093/nar/gkn631
M3 - Article
C2 - 18824479
AN - SCOPUS:58149200936
SN - 0305-1048
VL - 37
SP - D526-D530
JO - Nucleic acids research
JF - Nucleic acids research
IS - SUPPL. 1
ER -