TY - JOUR
T1 - Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding
AU - Antoszewski, Adam
AU - Feng, Chi Jui
AU - Vani, Bodhi P.
AU - Thiede, Erik H.
AU - Hong, Lu
AU - Weare, Jonathan
AU - Tokmakoff, Andrei
AU - Dinner, Aaron R.
N1 - Funding Information:
The authors thank John Strahan, Chatipat Lorpaiboon, Biman Bagchi, and Michael Weiss for helpful discussions. We thank Albert Pan, Bryan Jackson, and co-workers at D.E. Shaw for providing their trajectories for comparison. This work was supported by National Institutes of Health awards R35GM136381, R01GM109455, and 5R01GM118774. Computations were performed on resources provided by the University of Chicago Research Computing Center and the Extreme Science and Engineering Discovery Environment (NSF Grant ACI-1548562) Bridges (PSC) computing nodes through allocation TG-MCB180007.
Publisher Copyright:
Copyright © 2020 American Chemical Society.
PY - 2020/7/9
Y1 - 2020/7/9
N2 - The protein hormone insulin exists in various oligomeric forms, and a key step in binding its cellular receptor is dissociation of the dimer. This dissociation process and its corresponding association process have come to serve as paradigms of coupled (un)folding and (un)binding more generally. Despite its fundamental and practical importance, the mechanism of insulin dimer dissociation remains poorly understood. Here, we use molecular dynamics simulations, leveraging recent developments in umbrella sampling, to characterize the energetic and structural features of dissociation in unprecedented detail. We find that the dissociation is inherently multipathway with limiting behaviors corresponding to conformational selection and induced fit, the two prototypical mechanisms of coupled folding and binding. Along one limiting path, the dissociation leads to detachment of the C-terminal segment of the insulin B chain from the protein core, a feature believed to be essential for receptor binding. We simulate IR spectroscopy experiments to aid in interpreting current experiments and identify sites where isotopic labeling can be most effective for distinguishing the contributions of the limiting mechanisms.
AB - The protein hormone insulin exists in various oligomeric forms, and a key step in binding its cellular receptor is dissociation of the dimer. This dissociation process and its corresponding association process have come to serve as paradigms of coupled (un)folding and (un)binding more generally. Despite its fundamental and practical importance, the mechanism of insulin dimer dissociation remains poorly understood. Here, we use molecular dynamics simulations, leveraging recent developments in umbrella sampling, to characterize the energetic and structural features of dissociation in unprecedented detail. We find that the dissociation is inherently multipathway with limiting behaviors corresponding to conformational selection and induced fit, the two prototypical mechanisms of coupled folding and binding. Along one limiting path, the dissociation leads to detachment of the C-terminal segment of the insulin B chain from the protein core, a feature believed to be essential for receptor binding. We simulate IR spectroscopy experiments to aid in interpreting current experiments and identify sites where isotopic labeling can be most effective for distinguishing the contributions of the limiting mechanisms.
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U2 - 10.1021/acs.jpcb.0c03521
DO - 10.1021/acs.jpcb.0c03521
M3 - Article
C2 - 32515958
AN - SCOPUS:85088206693
SN - 1520-6106
VL - 124
SP - 5571
EP - 5587
JO - Journal of Physical Chemistry B
JF - Journal of Physical Chemistry B
IS - 27
ER -