Nonrandomness in protein sequences: Evidence for a physically driven stage of evolution?

Vijay S. Pande, Alexander Y. Grosberg, Toyoichi Tanaka

    Research output: Contribution to journalArticlepeer-review

    Abstract

    The sequences, or primary structures, of existing biopolymers-in particular, proteins-are believed to be a product of evolution. Are the sequences random? If not, what is the character of this nonrandomness? To explore the statistics of protein sequences, we use the idea of mapping the sequence onto the trajectory of a random walk, originally proposed by Peng et al. [Peng, C.-K., Buldyrev, S. V., Goldberger, A. L., Havlin, S., Sciortino, F., Simons, M. and Stanley, H. E. (1992) Nature (London) 356, 168-170] in their analysis of DNA sequences. Using three different mappings, corresponding to three basic physical interactions between amino acids, we found pronounced deviations from pure randomness, and these deviations seem directed toward minimization of the energy of the three-dimensional structure. We consider this result as evidence for a physically driven stage of evolution.

    Original languageEnglish (US)
    Pages (from-to)12972-12975
    Number of pages4
    JournalProceedings of the National Academy of Sciences of the United States of America
    Volume91
    Issue number26
    DOIs
    StatePublished - Dec 20 1994

    Keywords

    • correlations
    • origin of life

    ASJC Scopus subject areas

    • General

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