TY - GEN
T1 - Scarcity of Cellular Resources Decreases the Robustness of Toggle Switches to Noise
AU - Gyorgy, Andras
N1 - Publisher Copyright:
© 2020 AACC.
PY - 2020/7
Y1 - 2020/7
N2 - One of the rapidly emerging research topics in synthetic biology focuses on how genetic modules are affected by their context, a fundamental challenge in the modular design of large-scale genetic systems. A major source of such context-dependence is due to the sharing of scarce common cellular resources, such as transcriptional and translational machinery. Since toggle switches are one of the fundamental building blocks of genetic systems, in this paper we reveal how competition for shared resources affects the robustness of bistable toggle switches to noise. To this end, we study the mean transition time between the two stable equilibria by leveraging the Eyring-Kramers law, and show that it decreases due to the scarcity of shared resources, thus the system becomes less robust to noise. In order to achieve this, we define a quasi-potential function that allows us to formulate the problem as the overdamped motion of a Brownian particle in a potential field. In addition to revealing how various parameters affect the mean transition time, thus the robustness of the toggle switch, we also develop explicit design guidelines for creating toggle switches that are minimally affected by their context.
AB - One of the rapidly emerging research topics in synthetic biology focuses on how genetic modules are affected by their context, a fundamental challenge in the modular design of large-scale genetic systems. A major source of such context-dependence is due to the sharing of scarce common cellular resources, such as transcriptional and translational machinery. Since toggle switches are one of the fundamental building blocks of genetic systems, in this paper we reveal how competition for shared resources affects the robustness of bistable toggle switches to noise. To this end, we study the mean transition time between the two stable equilibria by leveraging the Eyring-Kramers law, and show that it decreases due to the scarcity of shared resources, thus the system becomes less robust to noise. In order to achieve this, we define a quasi-potential function that allows us to formulate the problem as the overdamped motion of a Brownian particle in a potential field. In addition to revealing how various parameters affect the mean transition time, thus the robustness of the toggle switch, we also develop explicit design guidelines for creating toggle switches that are minimally affected by their context.
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U2 - 10.23919/ACC45564.2020.9147271
DO - 10.23919/ACC45564.2020.9147271
M3 - Conference contribution
AN - SCOPUS:85089188201
T3 - Proceedings of the American Control Conference
SP - 4264
EP - 4269
BT - 2020 American Control Conference, ACC 2020
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2020 American Control Conference, ACC 2020
Y2 - 1 July 2020 through 3 July 2020
ER -