SlicerSALT: From Medical Images to Quantitative Insights of Anatomy

Jared Vicory; Ye Han; Juan Carlos Prieto; David Allemang; Mathieu Leclercq; Connor Bowley; Harald Scheirich; Jean Christophe Fillion-Robin; Steve Pizer; James Fishbaugh; Guido Gerig; Martin Styner; Beatriz Paniagua

doi:10.1007/978-3-031-46914-5_16

SlicerSALT: From Medical Images to Quantitative Insights of Anatomy

Jared Vicory, Ye Han, Juan Carlos Prieto, David Allemang, Mathieu Leclercq, Connor Bowley, Harald Scheirich, Jean Christophe Fillion-Robin, Steve Pizer, James Fishbaugh, Guido Gerig, Martin Styner, Beatriz Paniagua

Biomedical Engineering

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

Three-dimensional (3D) shape lies at the core of understanding the physical objects that surround us. In the biomedical field, shape analysis has been shown to be powerful in quantifying how anatomy changes with time and disease. The Shape AnaLysis Toolbox (SALT) was created as a vehicle for disseminating advanced shape methodology as an open source, free, and comprehensive software tool. We present new developments in our shape analysis software package, including easy-to-interpret statistical methods to better leverage the quantitative information contained in SALT’s shape representations. We also show SlicerPipelines, a module to improve the usability of SALT by facilitating the analysis of large-scale data sets, automating workflows for non-expert users, and allowing the distribution of reproducible workflows.

Original language	English (US)
Title of host publication	Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings
Editors	Christian Wachinger, Beatriz Paniagua, Shireen Elhabian, Jianning Li, Jan Egger
Publisher	Springer Science and Business Media Deutschland GmbH
Pages	201-210
Number of pages	10
ISBN (Print)	9783031469138
DOIs	https://doi.org/10.1007/978-3-031-46914-5_16
State	Published - 2023
Event	International Workshop on Shape in Medical Imaging, ShapeMI 2023 - Vancouver, Canada Duration: Oct 8 2023 → Oct 8 2023

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	14350 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	International Workshop on Shape in Medical Imaging, ShapeMI 2023
Country/Territory	Canada
City	Vancouver
Period	10/8/23 → 10/8/23

Keywords

Open-source software
Shape analysis
Statistics

ASJC Scopus subject areas

Theoretical Computer Science
General Computer Science

Access to Document

10.1007/978-3-031-46914-5_16

Cite this

Vicory, J., Han, Y., Prieto, J. C., Allemang, D., Leclercq, M., Bowley, C., Scheirich, H., Fillion-Robin, J. C., Pizer, S., Fishbaugh, J., Gerig, G., Styner, M., & Paniagua, B. (2023). SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. In C. Wachinger, B. Paniagua, S. Elhabian, J. Li, & J. Egger (Eds.), Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings (pp. 201-210). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 14350 LNCS). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-031-46914-5_16

SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. / Vicory, Jared; Han, Ye; Prieto, Juan Carlos et al.
Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. ed. / Christian Wachinger; Beatriz Paniagua; Shireen Elhabian; Jianning Li; Jan Egger. Springer Science and Business Media Deutschland GmbH, 2023. p. 201-210 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 14350 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Vicory, J, Han, Y, Prieto, JC, Allemang, D, Leclercq, M, Bowley, C, Scheirich, H, Fillion-Robin, JC, Pizer, S, Fishbaugh, J, Gerig, G, Styner, M & Paniagua, B 2023, SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. in C Wachinger, B Paniagua, S Elhabian, J Li & J Egger (eds), Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 14350 LNCS, Springer Science and Business Media Deutschland GmbH, pp. 201-210, International Workshop on Shape in Medical Imaging, ShapeMI 2023, Vancouver, Canada, 10/8/23. https://doi.org/10.1007/978-3-031-46914-5_16

Vicory J, Han Y, Prieto JC, Allemang D, Leclercq M, Bowley C et al. SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. In Wachinger C, Paniagua B, Elhabian S, Li J, Egger J, editors, Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. Springer Science and Business Media Deutschland GmbH. 2023. p. 201-210. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-031-46914-5_16

Vicory, Jared ; Han, Ye ; Prieto, Juan Carlos et al. / SlicerSALT : From Medical Images to Quantitative Insights of Anatomy. Shape in Medical Imaging - International Workshop, ShapeMI 2023, Held in Conjunction with MICCAI 2023, Proceedings. editor / Christian Wachinger ; Beatriz Paniagua ; Shireen Elhabian ; Jianning Li ; Jan Egger. Springer Science and Business Media Deutschland GmbH, 2023. pp. 201-210 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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