TY - JOUR
T1 - Source verification of mis-identified Arabidopsis thaliana accessions
AU - Anastasio, Alison E.
AU - Platt, Alexander
AU - Horton, Matthew
AU - Grotewold, Erich
AU - Scholl, Randy
AU - Borevitz, Justin O.
AU - Nordborg, Magnus
AU - Bergelson, Joy
PY - 2011/8
Y1 - 2011/8
N2 - A major strength of Arabidopsis thaliana as a model lies in the availability of a large number of naturally occurring inbred lines. Recent studies of A. thaliana population structure, using thousands of accessions from stock center and natural collections, have revealed a robust pattern of isolation by distance at several spatial scales, such that genetically identical individuals are generally found close to each other. However, some individual accessions deviate from this pattern. While some of these may be the products of rare long-distance dispersal events, many deviations may be the result of mis-identification, in the sense that the data regarding location of origin data are incorrect. Here, we aim to identify such discrepancies. Of the 5965 accessions examined, we conclude that 286 deserve special attention as being potentially mis-identified. We describe these suspicious accessions and their possible origins, and advise caution with regard to their use in experiments in which accurate information on geographic origin is important. Finally, we discuss possibilities for maintaining the integrity of stock lines.
AB - A major strength of Arabidopsis thaliana as a model lies in the availability of a large number of naturally occurring inbred lines. Recent studies of A. thaliana population structure, using thousands of accessions from stock center and natural collections, have revealed a robust pattern of isolation by distance at several spatial scales, such that genetically identical individuals are generally found close to each other. However, some individual accessions deviate from this pattern. While some of these may be the products of rare long-distance dispersal events, many deviations may be the result of mis-identification, in the sense that the data regarding location of origin data are incorrect. Here, we aim to identify such discrepancies. Of the 5965 accessions examined, we conclude that 286 deserve special attention as being potentially mis-identified. We describe these suspicious accessions and their possible origins, and advise caution with regard to their use in experiments in which accurate information on geographic origin is important. Finally, we discuss possibilities for maintaining the integrity of stock lines.
KW - Arabidopsis thaliana
KW - contamination
KW - long-distance dispersal
KW - natural variation
KW - population structure
KW - stock center
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U2 - 10.1111/j.1365-313X.2011.04606.x
DO - 10.1111/j.1365-313X.2011.04606.x
M3 - Review article
C2 - 21481029
AN - SCOPUS:79960919886
SN - 0960-7412
VL - 67
SP - 554
EP - 566
JO - Plant Journal
JF - Plant Journal
IS - 3
ER -