The confinement of an annealed branched polymer by a potential well

Alexander Y. Grosberg, Joshua Kelly, Robijn Bruinsma

    Research output: Contribution to journalArticle

    Abstract

    The Lifshitz equation for the confinement of a linear polymer in a spherical cavity of radius R has the form of the Schrödinger equation for a quantum particle trapped in a potential well with flat bottom and infinite walls at radius R. We show that the Lifshitz equation of a confined annealed branched polymer has the form of the Schrödinger equation for a quantum harmonic oscillator. The harmonic oscillator potential results from the repulsion of the many branches from the potential walls. Mathematically, it must be obtained from the solution of the equation of motion of a second, now classical, particle in a non-linear potential that depends self-consistently on the eigenvalue of the quantum oscillator. The resulting confinement energy has a 1/R4 dependence on the confinement radius R, in agreement with scaling arguments. We discuss the application of this result to the problem of the confinement of single-stranded RNA molecules inside spherical capsids.

    Original languageEnglish (US)
    Pages (from-to)101-109
    Number of pages9
    JournalLow Temperature Physics
    Volume43
    Issue number1
    DOIs
    StatePublished - Jan 1 2017

    ASJC Scopus subject areas

    • Physics and Astronomy (miscellaneous)

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