TY - JOUR
T1 - The counterfactual χ-GAN
T2 - Finding comparable cohorts in observational health data
AU - Averitt, Amelia J.
AU - Vanitchanant, Natnicha
AU - Ranganath, Rajesh
AU - Perotte, Adler J.
N1 - Publisher Copyright:
© 2020
PY - 2020/9
Y1 - 2020/9
N2 - Causal inference often relies on the counterfactual framework, which requires that treatment assignment is independent of the outcome, known as strong ignorability. Approaches to enforcing strong ignorability in causal analyses of observational data include weighting and matching methods. Effect estimates, such as the average treatment effect (ATE), are then estimated as expectations under the re-weighted or matched distribution, P. The choice of P is important and can impact the interpretation of the effect estimate and the variance of effect estimates. In this work, instead of specifying P, we learn a distribution that simultaneously maximizes coverage and minimizes variance of ATE estimates. In order to learn this distribution, this research proposes a generative adversarial network (GAN)-based model called the Counterfactual χ-GAN (cGAN), which also learns feature-balancing weights and supports unbiased causal estimation in the absence of unobserved confounding. Our model minimizes the Pearson χ2-divergence, which we show simultaneously maximizes coverage and minimizes the variance of importance sampling estimates. To our knowledge, this is the first such application of the Pearson χ2-divergence. We demonstrate the effectiveness of cGAN in achieving feature balance relative to established weighting methods in simulation and with real-world medical data.
AB - Causal inference often relies on the counterfactual framework, which requires that treatment assignment is independent of the outcome, known as strong ignorability. Approaches to enforcing strong ignorability in causal analyses of observational data include weighting and matching methods. Effect estimates, such as the average treatment effect (ATE), are then estimated as expectations under the re-weighted or matched distribution, P. The choice of P is important and can impact the interpretation of the effect estimate and the variance of effect estimates. In this work, instead of specifying P, we learn a distribution that simultaneously maximizes coverage and minimizes variance of ATE estimates. In order to learn this distribution, this research proposes a generative adversarial network (GAN)-based model called the Counterfactual χ-GAN (cGAN), which also learns feature-balancing weights and supports unbiased causal estimation in the absence of unobserved confounding. Our model minimizes the Pearson χ2-divergence, which we show simultaneously maximizes coverage and minimizes the variance of importance sampling estimates. To our knowledge, this is the first such application of the Pearson χ2-divergence. We demonstrate the effectiveness of cGAN in achieving feature balance relative to established weighting methods in simulation and with real-world medical data.
KW - Causal inference
KW - Deep learning
KW - GANs
KW - Health
KW - Machine learning
KW - Observational studies
UR - http://www.scopus.com/inward/record.url?scp=85089338329&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85089338329&partnerID=8YFLogxK
U2 - 10.1016/j.jbi.2020.103515
DO - 10.1016/j.jbi.2020.103515
M3 - Article
C2 - 32771540
AN - SCOPUS:85089338329
SN - 1532-0464
VL - 109
JO - Journal of Biomedical Informatics
JF - Journal of Biomedical Informatics
M1 - 103515
ER -