TY - JOUR
T1 - The in vitro selection world
AU - Jijakli, Kenan
AU - Khraiwesh, Basel
AU - Fu, Weiqi
AU - Luo, Liming
AU - Alzahmi, Amnah
AU - Koussa, Joseph
AU - Chaiboonchoe, Amphun
AU - Kirmizialtin, Serdal
AU - Yen, Laising
AU - Salehi-Ashtiani, Kourosh
N1 - Publisher Copyright:
© 2016 The Authors
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2016/8/15
Y1 - 2016/8/15
N2 - Through iterative cycles of selection, amplification, and mutagenesis, in vitro selection provides the ability to isolate molecules of desired properties and function from large pools (libraries) of random molecules with as many as 1016 distinct species. This review, in recognition of a quarter of century of scientific discoveries made through in vitro selection, starts with a brief overview of the method and its history. It further covers recent developments in in vitro selection with a focus on tools that enhance the capabilities of in vitro selection and its expansion from being purely a nucleic acids selection to that of polypeptides and proteins. In addition, we cover how next generation sequencing and modern biological computational tools are being used to complement in vitro selection experiments. On the very least, sequencing and computational tools can translate the large volume of information associated with in vitro selection experiments to manageable, analyzable, and exploitable information. Finally, in vivo selection is briefly compared and contrasted to in vitro selection to highlight the unique capabilities of each method.
AB - Through iterative cycles of selection, amplification, and mutagenesis, in vitro selection provides the ability to isolate molecules of desired properties and function from large pools (libraries) of random molecules with as many as 1016 distinct species. This review, in recognition of a quarter of century of scientific discoveries made through in vitro selection, starts with a brief overview of the method and its history. It further covers recent developments in in vitro selection with a focus on tools that enhance the capabilities of in vitro selection and its expansion from being purely a nucleic acids selection to that of polypeptides and proteins. In addition, we cover how next generation sequencing and modern biological computational tools are being used to complement in vitro selection experiments. On the very least, sequencing and computational tools can translate the large volume of information associated with in vitro selection experiments to manageable, analyzable, and exploitable information. Finally, in vivo selection is briefly compared and contrasted to in vitro selection to highlight the unique capabilities of each method.
KW - Aptamer
KW - In silico
KW - In vitro selection
KW - In vivo
KW - Next generation sequencing
KW - Phage display
KW - RNA ligands
KW - SELEX
UR - http://www.scopus.com/inward/record.url?scp=85008191107&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85008191107&partnerID=8YFLogxK
U2 - 10.1016/j.ymeth.2016.06.003
DO - 10.1016/j.ymeth.2016.06.003
M3 - Review article
C2 - 27312879
AN - SCOPUS:85008191107
SN - 1046-2023
VL - 106
SP - 3
EP - 13
JO - Methods
JF - Methods
ER -