TY - GEN
T1 - Three-dimensional spike localization and improved motion correction for Neuropixels recordings
AU - Boussard, Julien
AU - Varol, Erdem
AU - Lee, Hyun Dong
AU - Dethe, Nishchal
AU - Paninski, Liam
N1 - Publisher Copyright:
© 2021 Neural information processing systems foundation. All rights reserved.
PY - 2021
Y1 - 2021
N2 - Neuropixels (NP) probes are dense linear multi-electrode arrays that have rapidly become essential tools for studying the electrophysiology of large neural populations. Unfortunately, a number of challenges remain in analyzing the large datasets output by these probes. Here we introduce several new methods for extracting useful spiking information from NP probes. First, we use a simple point neuron model, together with a neural-network denoiser, to efficiently map single spikes detected on the probe into three-dimensional localizations. Previous methods localized individual spikes in two dimensions only; we show that the new localization approach is significantly more robust and provides an improved feature set for clustering spikes according to neural identity (“spike sorting"). Next, we denoise the resulting three-dimensional point-cloud representation of the data, and show that the resulting 3D images can be accurately registered over time, leading to improved tracking of time-varying neural activity over the probe, and in turn, crisper estimates of neural clusters over time. Open source code is available at https://github.com/int-brain-lab/spikes_localization_registration.git.
AB - Neuropixels (NP) probes are dense linear multi-electrode arrays that have rapidly become essential tools for studying the electrophysiology of large neural populations. Unfortunately, a number of challenges remain in analyzing the large datasets output by these probes. Here we introduce several new methods for extracting useful spiking information from NP probes. First, we use a simple point neuron model, together with a neural-network denoiser, to efficiently map single spikes detected on the probe into three-dimensional localizations. Previous methods localized individual spikes in two dimensions only; we show that the new localization approach is significantly more robust and provides an improved feature set for clustering spikes according to neural identity (“spike sorting"). Next, we denoise the resulting three-dimensional point-cloud representation of the data, and show that the resulting 3D images can be accurately registered over time, leading to improved tracking of time-varying neural activity over the probe, and in turn, crisper estimates of neural clusters over time. Open source code is available at https://github.com/int-brain-lab/spikes_localization_registration.git.
UR - http://www.scopus.com/inward/record.url?scp=85130688594&partnerID=8YFLogxK
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M3 - Conference contribution
AN - SCOPUS:85130688594
T3 - Advances in Neural Information Processing Systems
SP - 22095
EP - 22105
BT - Advances in Neural Information Processing Systems 34 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021
A2 - Ranzato, Marc'Aurelio
A2 - Beygelzimer, Alina
A2 - Dauphin, Yann
A2 - Liang, Percy S.
A2 - Wortman Vaughan, Jenn
PB - Neural information processing systems foundation
T2 - 35th Conference on Neural Information Processing Systems, NeurIPS 2021
Y2 - 6 December 2021 through 14 December 2021
ER -