TY - JOUR
T1 - Unrolled-DOT
T2 - An interpretable deep network for diffuse optical tomography
AU - Zhao, Yongyi
AU - Raghuram, Ankit
AU - Wang, Fay
AU - Kim, Stephen Hyunkeol
AU - Hielscher, Andreas
AU - Robinson, Jacob T.
AU - Veeraraghavan, Ashok
N1 - Funding Information:
The authors would like to thank Yicheng Wu, Vivek Boominathan, and Salman Khan for their advice and insightful discussions in this project. This research was developed with funding from the Defense Advanced Research Projects Agency (DARPA) (Grant No. N66001-19-C-4020). The views, opinions and/or findings expressed are those of the authors and should not be interpreted as representing the official views or policies of the Department of Defense or the U.S. Government. In addition, this project was also funded in part by the NSF Expeditions in Computing (Grant No. 1730574). Author Yongyi Zhao was supported by a training fellowship from the NLM Training Program (Grant No. T15LM007093); author Fay Wang was supported by a National Science Foundation Graduate Research Fellowship (Grant No. DGE-2036197). In addition, this project was also funded in part by the NSF CAREER award (Grant No. 1652633).
Publisher Copyright:
© 2023 SPIE. All rights reserved.
PY - 2023/3/1
Y1 - 2023/3/1
N2 - Significance: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering media. ToF-DOT and many traditional DOT methods require an image reconstruction algorithm. Unfortunately, this algorithm often requires long computational runtimes and may produce lower quality reconstructions in the presence of model mismatch or improper hyperparameter tuning. Aim: We used a data-driven unrolled network as our ToF-DOT inverse solver. The unrolled network is faster than traditional inverse solvers and achieves higher reconstruction quality by accounting for model mismatch. Approach: Our model Unrolled-DOT uses the learned iterative shrinkage thresholding algorithm. In addition, we incorporate a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to further increase the reconstruction quality. We trained and tested our model on simulated and real-world data and benchmarked against physics-based and learning-based inverse solvers. Results: In experiments on real-world data, Unrolled-DOT outperformed learning-based algorithms and achieved over 10 reduction in runtime and mean-squared error, compared to traditional physics-based solvers. Conclusion: We demonstrated a learning-based ToF-DOT inverse solver that achieves state-ofthe- art performance in speed and reconstruction quality, which can aid in future applications for noninvasive biomedical imaging.
AB - Significance: Imaging through scattering media is critical in many biomedical imaging applications, such as breast tumor detection and functional neuroimaging. Time-of-flight diffuse optical tomography (ToF-DOT) is one of the most promising methods for high-resolution imaging through scattering media. ToF-DOT and many traditional DOT methods require an image reconstruction algorithm. Unfortunately, this algorithm often requires long computational runtimes and may produce lower quality reconstructions in the presence of model mismatch or improper hyperparameter tuning. Aim: We used a data-driven unrolled network as our ToF-DOT inverse solver. The unrolled network is faster than traditional inverse solvers and achieves higher reconstruction quality by accounting for model mismatch. Approach: Our model Unrolled-DOT uses the learned iterative shrinkage thresholding algorithm. In addition, we incorporate a refinement U-Net and Visual Geometry Group (VGG) perceptual loss to further increase the reconstruction quality. We trained and tested our model on simulated and real-world data and benchmarked against physics-based and learning-based inverse solvers. Results: In experiments on real-world data, Unrolled-DOT outperformed learning-based algorithms and achieved over 10 reduction in runtime and mean-squared error, compared to traditional physics-based solvers. Conclusion: We demonstrated a learning-based ToF-DOT inverse solver that achieves state-ofthe- art performance in speed and reconstruction quality, which can aid in future applications for noninvasive biomedical imaging.
KW - machine learning
KW - optical tomography
KW - time-of-flight imaging
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U2 - 10.1117/1.JBO.28.3.036002
DO - 10.1117/1.JBO.28.3.036002
M3 - Article
C2 - 36908760
AN - SCOPUS:85150226112
SN - 1083-3668
VL - 28
SP - 36002
JO - Journal of biomedical optics
JF - Journal of biomedical optics
IS - 3
ER -