TY - GEN
T1 - Using maximum topology matching to explore differences in species distribution models
AU - Poco, Jorge
AU - Doraiswamy, Harish
AU - Talbert, Marian
AU - Morisette, Jeffrey
AU - Silva, Cláudio T.
N1 - Funding Information:
This work was supported in part by a Google Faculty Award, an IBM Faculty Award, the Moore-Sloan Data Science Environment at NYU, the NYU School of Engineering, the NYU Center for Urban Science and Progress, AT&T, NSF award CNS-1229185, DOE, and the NASA Biodiversity Program award NNH11AS091. MT and JM's contribution was funded by the Department of the Interior North Central Climate Science Center. Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
Publisher Copyright:
© 2015 IEEE.
PY - 2016/3/8
Y1 - 2016/3/8
N2 - Species distribution models (SDM) are used to help understand what drives the distribution of various plant and animal species. These models are typically high dimensional scalar functions, where the dimensions of the domain correspond to predictor variables of the model algorithm. Understanding and exploring the differences between models help ecologists understand areas where their data or understanding of the system is incomplete and will help guide further investigation in these regions. These differences can also indicate an important source of model to model uncertainty. However, it is cumbersome and often impractical to perform this analysis using existing tools, which allows for manual exploration of the models usually as 1-dimensional curves. In this paper, we propose a topology-based framework to help ecologists explore the differences in various SDMs directly in the high dimensional domain. In order to accomplish this, we introduce the concept of maximum topology matching that computes a locality-aware correspondence between similar extrema of two scalar functions. The matching is then used to compute the similarity between two functions. We also design a visualization interface that allows ecologists to explore SDMs using their topological features and to study the differences between pairs of models found using maximum topological matching. We demonstrate the utility of the proposed framework through several use cases using different data sets and report the feedback obtained from ecologists.
AB - Species distribution models (SDM) are used to help understand what drives the distribution of various plant and animal species. These models are typically high dimensional scalar functions, where the dimensions of the domain correspond to predictor variables of the model algorithm. Understanding and exploring the differences between models help ecologists understand areas where their data or understanding of the system is incomplete and will help guide further investigation in these regions. These differences can also indicate an important source of model to model uncertainty. However, it is cumbersome and often impractical to perform this analysis using existing tools, which allows for manual exploration of the models usually as 1-dimensional curves. In this paper, we propose a topology-based framework to help ecologists explore the differences in various SDMs directly in the high dimensional domain. In order to accomplish this, we introduce the concept of maximum topology matching that computes a locality-aware correspondence between similar extrema of two scalar functions. The matching is then used to compute the similarity between two functions. We also design a visualization interface that allows ecologists to explore SDMs using their topological features and to study the differences between pairs of models found using maximum topological matching. We demonstrate the utility of the proposed framework through several use cases using different data sets and report the feedback obtained from ecologists.
KW - Function similarity
KW - computational topology
KW - high dimensional visualization
KW - persistence
KW - species distribution models
UR - http://www.scopus.com/inward/record.url?scp=84966455217&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84966455217&partnerID=8YFLogxK
U2 - 10.1109/SciVis.2015.7429486
DO - 10.1109/SciVis.2015.7429486
M3 - Conference contribution
AN - SCOPUS:84966455217
T3 - 2015 IEEE Scientific Visualization Conference, SciVis 2015 - Proceedings
SP - 9
EP - 16
BT - 2015 IEEE Scientific Visualization Conference, SciVis 2015 - Proceedings
A2 - Ahrens, James
A2 - Qu, Huamin
A2 - Roerdink, Jos
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - IEEE Scientific Visualization Conference, SciVis 2015
Y2 - 25 October 2015 through 30 October 2015
ER -